Wall clock time and date at job start Mon Mar 30 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47228 * 2 1 4 4 C 1.46494 * 119.99680 * 277.52080 * 3 2 1 5 5 C 1.50702 * 109.47444 * 269.99940 * 4 3 2 6 6 H 1.07997 * 120.00172 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99797 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00242 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99439 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47342 * 90.00268 * 9 7 5 11 11 H 1.48497 * 109.46856 * 210.00403 * 9 7 5 12 12 H 1.48506 * 109.47152 * 329.99653 * 9 7 5 13 13 C 1.34774 * 119.99987 * 97.52380 * 3 2 1 14 14 O 1.21598 * 119.99917 * 185.79424 * 13 3 2 15 15 C 1.47516 * 120.00349 * 5.79658 * 13 3 2 16 16 C 1.39772 * 120.06797 * 134.33899 * 15 13 3 17 17 C 1.37649 * 119.97239 * 180.27384 * 16 15 13 18 18 C 1.39149 * 120.09229 * 359.50151 * 17 16 15 19 19 N 1.39200 * 119.93274 * 180.25060 * 18 17 16 20 20 C 1.39371 * 120.12762 * 0.27109 * 18 17 16 21 21 F 1.35103 * 119.98556 * 180.02562 * 20 18 17 22 22 C 1.37797 * 120.03200 * 359.97438 * 20 18 17 23 23 H 1.09000 * 109.47238 * 189.58193 * 1 2 3 24 24 H 1.09002 * 109.47028 * 309.58237 * 1 2 3 25 25 H 1.09000 * 109.46951 * 69.58055 * 1 2 3 26 26 H 1.08999 * 109.47306 * 239.99916 * 2 1 3 27 27 H 1.09005 * 109.47156 * 119.99803 * 2 1 3 28 28 H 1.08998 * 109.47329 * 30.00149 * 4 3 2 29 29 H 1.09007 * 109.47063 * 149.99855 * 4 3 2 30 30 H 0.96997 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.01480 * 0.05057 * 16 15 13 32 32 H 1.07997 * 119.95792 * 179.77547 * 17 16 15 33 33 H 0.96999 * 120.00187 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99443 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.04542 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1059 2.1271 -1.2578 5 6 3.4640 1.9134 -1.8751 6 1 4.1892 1.2844 -1.3803 7 6 3.7806 2.5208 -3.0718 8 7 2.8977 3.2870 -3.6742 9 14 5.4638 2.2552 -3.8373 10 1 5.4185 1.0729 -4.7346 11 1 5.8463 3.4571 -4.6210 12 1 6.4646 2.0247 -2.7646 13 6 2.3871 1.9656 1.1571 14 8 2.6918 3.1427 1.1737 15 6 2.4210 1.1774 2.4036 16 6 3.5173 1.2761 3.2650 17 6 3.5495 0.5354 4.4247 18 6 2.4873 -0.3040 4.7462 19 7 2.5210 -1.0475 5.9225 20 6 1.3900 -0.4019 3.8925 21 9 0.3600 -1.2174 4.2077 22 6 1.3546 0.3334 2.7277 23 1 -0.3634 -1.0133 0.1711 24 1 -0.3633 0.6548 0.7920 25 1 -0.3633 0.3585 -0.9631 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3356 1.7747 -1.9436 29 1 1.9592 3.1892 -1.0614 30 1 3.1206 3.7146 -4.5158 31 1 4.3405 1.9305 3.0189 32 1 4.3984 0.6092 5.0883 33 1 3.2842 -0.9800 6.5173 34 1 1.7808 -1.6327 6.1476 35 1 0.5046 0.2573 2.0658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054413216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:50 Heat of formation + Delta-G solvation = -48.167099 kcal Electronic energy + Delta-G solvation = -20109.059316 eV Core-core repulsion = 16828.692216 eV Total energy + Delta-G solvation = -3280.367099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.80591 -39.88933 -38.11089 -35.38467 -34.63448 -32.75876 -30.76830 -29.96287 -29.15147 -26.91196 -23.63726 -23.05989 -22.93848 -21.79709 -19.06320 -17.60751 -17.39140 -16.90816 -16.37066 -15.97103 -15.59206 -15.35605 -15.01909 -14.45673 -14.37598 -14.08666 -13.26900 -13.10583 -12.82727 -12.76199 -12.29229 -12.19192 -11.95523 -11.61790 -11.26244 -11.15323 -10.89038 -10.82063 -10.62007 -10.40065 -10.11398 -9.61320 -8.99855 -8.81081 -8.41515 -7.71443 -7.55914 -6.02306 -4.07055 1.18729 1.24511 3.29534 3.31794 3.38357 3.42723 3.55451 3.78753 4.03042 4.26344 4.46550 4.71786 4.96789 5.21981 5.27343 5.32317 5.40367 5.57968 5.66213 5.73713 5.93353 6.02802 6.09701 6.14246 6.28387 6.47981 6.55380 6.68669 7.11149 7.19832 7.42957 7.48377 7.57084 7.94527 8.25719 8.43460 8.91353 9.09672 9.57974 11.05770 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.005093 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.961211 B = 5495.884765 C = 5955.389928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 N -0.589 5.589 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.553 3.447 14 O -0.538 6.538 15 C -0.146 4.146 16 C -0.028 4.028 17 C -0.183 4.183 18 C 0.200 3.800 19 N -0.871 5.871 20 C 0.006 3.994 21 F -0.145 7.145 22 C -0.089 4.089 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.402 0.598 34 H 0.401 0.599 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -10.635 16.259 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.340 3.660 14 O -0.416 6.416 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.205 4.205 18 C 0.094 3.906 19 N -0.410 5.410 20 C -0.018 4.018 21 F -0.124 7.124 22 C -0.108 4.108 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.559 -9.900 16.036 19.019 hybrid contribution 0.718 -0.574 -0.148 0.931 sum -1.841 -10.475 15.888 19.119 Atomic orbital electron populations 1.22355 0.96850 1.01408 1.02700 1.21652 0.93515 0.84461 1.03129 1.48176 1.62008 1.13299 1.08489 1.19307 0.97020 0.92873 0.78206 1.21449 0.99517 1.29844 1.05784 0.92397 1.24930 0.97316 0.94900 0.96910 1.69932 1.34575 1.31331 1.17497 0.86500 0.84196 0.77591 0.79155 1.20658 1.21105 1.19886 1.17998 0.78258 0.86797 0.82984 1.90763 1.49243 1.15642 1.85996 1.19824 0.96298 1.01041 0.97940 1.21017 0.96952 0.95431 0.91377 1.20402 0.98778 1.01350 1.00014 1.17848 0.93271 0.92485 0.87045 1.42235 1.25882 1.50269 1.22583 1.16913 0.87153 1.00058 0.97693 1.91427 1.56907 1.71066 1.93015 1.21681 1.00052 0.94003 0.95102 0.91904 0.92486 0.91545 0.90089 0.90728 0.94843 0.93609 0.92724 0.84518 0.84897 0.76928 0.77029 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.14 37.16 0.34 -2.13 16 2 C 0.10 1.63 5.59 -4.04 -0.02 1.60 16 3 N -0.59 -12.79 2.46 -176.29 -0.43 -13.22 16 4 C 0.24 6.45 5.22 -5.20 -0.03 6.42 16 5 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 C 0.55 12.07 7.25 -12.48 -0.09 11.98 16 14 O -0.54 -13.97 16.54 5.28 0.09 -13.89 16 15 C -0.15 -2.49 5.08 -104.96 -0.53 -3.02 16 16 C -0.03 -0.42 9.68 -39.22 -0.38 -0.80 16 17 C -0.18 -2.14 9.87 -39.46 -0.39 -2.53 16 18 C 0.20 2.30 6.76 -83.76 -0.57 1.73 16 19 N -0.87 -6.92 9.06 32.45 0.29 -6.63 16 20 C 0.01 0.07 7.30 -39.32 -0.29 -0.21 16 21 F -0.15 -1.84 16.62 2.25 0.04 -1.80 16 22 C -0.09 -1.31 7.38 -39.16 -0.29 -1.59 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 27 H 0.07 1.13 5.10 -51.93 -0.26 0.86 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.36 7.35 -51.92 -0.38 0.98 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.40 2.21 8.83 -40.82 -0.36 1.85 16 34 H 0.40 2.82 8.29 -40.82 -0.34 2.48 16 35 H 0.15 2.13 3.71 -52.49 -0.19 1.94 16 LS Contribution 301.26 15.07 4.54 4.54 Total: -1.00 -33.31 301.26 -6.37 -39.68 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.95 Total: 2.57 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.66 Total: -2.19 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.60 Total: -45.73 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.31 -6.37 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054413216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.490 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds