Wall clock time and date at job start Mon Mar 30 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47228 * 2 1 4 4 C 1.46494 * 119.99680 * 277.52080 * 3 2 1 5 5 C 1.50702 * 109.47444 * 269.99940 * 4 3 2 6 6 H 1.07997 * 120.00172 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99797 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00242 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99439 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47342 * 90.00268 * 9 7 5 11 11 H 1.48497 * 109.46856 * 210.00403 * 9 7 5 12 12 H 1.48506 * 109.47152 * 329.99653 * 9 7 5 13 13 C 1.34774 * 119.99987 * 97.52380 * 3 2 1 14 14 O 1.21598 * 119.99917 * 185.79424 * 13 3 2 15 15 C 1.47516 * 120.00349 * 5.79658 * 13 3 2 16 16 C 1.39772 * 120.06797 * 134.33899 * 15 13 3 17 17 C 1.37649 * 119.97239 * 180.27384 * 16 15 13 18 18 C 1.39149 * 120.09229 * 359.50151 * 17 16 15 19 19 N 1.39200 * 119.93274 * 180.25060 * 18 17 16 20 20 C 1.39371 * 120.12762 * 0.27109 * 18 17 16 21 21 F 1.35103 * 119.98556 * 180.02562 * 20 18 17 22 22 C 1.37797 * 120.03200 * 359.97438 * 20 18 17 23 23 H 1.09000 * 109.47238 * 189.58193 * 1 2 3 24 24 H 1.09002 * 109.47028 * 309.58237 * 1 2 3 25 25 H 1.09000 * 109.46951 * 69.58055 * 1 2 3 26 26 H 1.08999 * 109.47306 * 239.99916 * 2 1 3 27 27 H 1.09005 * 109.47156 * 119.99803 * 2 1 3 28 28 H 1.08998 * 109.47329 * 30.00149 * 4 3 2 29 29 H 1.09007 * 109.47063 * 149.99855 * 4 3 2 30 30 H 0.96997 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.01480 * 0.05057 * 16 15 13 32 32 H 1.07997 * 119.95792 * 179.77547 * 17 16 15 33 33 H 0.96999 * 120.00187 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99443 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.04542 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1059 2.1271 -1.2578 5 6 3.4640 1.9134 -1.8751 6 1 4.1892 1.2844 -1.3803 7 6 3.7806 2.5208 -3.0718 8 7 2.8977 3.2870 -3.6742 9 14 5.4638 2.2552 -3.8373 10 1 5.4185 1.0729 -4.7346 11 1 5.8463 3.4571 -4.6210 12 1 6.4646 2.0247 -2.7646 13 6 2.3871 1.9656 1.1571 14 8 2.6918 3.1427 1.1737 15 6 2.4210 1.1774 2.4036 16 6 3.5173 1.2761 3.2650 17 6 3.5495 0.5354 4.4247 18 6 2.4873 -0.3040 4.7462 19 7 2.5210 -1.0475 5.9225 20 6 1.3900 -0.4019 3.8925 21 9 0.3600 -1.2174 4.2077 22 6 1.3546 0.3334 2.7277 23 1 -0.3634 -1.0133 0.1711 24 1 -0.3633 0.6548 0.7920 25 1 -0.3633 0.3585 -0.9631 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3356 1.7747 -1.9436 29 1 1.9592 3.1892 -1.0614 30 1 3.1206 3.7146 -4.5158 31 1 4.3405 1.9305 3.0189 32 1 4.3984 0.6092 5.0883 33 1 3.2842 -0.9800 6.5173 34 1 1.7808 -1.6327 6.1476 35 1 0.5046 0.2573 2.0658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054413216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:48 Heat of formation + Delta-G solvation = -71.101111 kcal Electronic energy + Delta-G solvation = -20110.053809 eV Core-core repulsion = 16828.692216 eV Total energy + Delta-G solvation = -3281.361593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.80269 -41.29898 -39.41192 -37.08978 -35.71681 -34.78858 -32.11514 -31.26872 -30.41712 -28.72778 -25.39424 -24.44483 -24.07939 -23.17132 -20.51797 -18.81065 -18.57266 -18.40545 -18.03372 -17.34034 -16.91880 -16.61496 -16.23054 -16.05815 -15.83962 -15.48453 -14.76079 -14.41594 -14.17831 -14.00923 -13.69578 -13.59064 -13.31024 -13.27900 -13.05398 -12.73898 -12.54525 -12.38307 -12.08013 -12.02282 -11.71479 -11.59467 -10.71715 -10.63064 -9.87904 -9.48893 -8.56171 -8.21277 -6.36634 0.05461 0.19681 1.37776 1.40866 1.51312 1.82539 2.27293 2.43891 2.68610 2.78374 3.07979 3.22350 3.56350 3.79216 4.05775 4.16742 4.23156 4.35945 4.52623 4.60923 4.81253 4.89419 4.93225 5.01448 5.06392 5.07546 5.21345 5.34423 5.45341 5.57693 5.67544 5.84940 6.06793 6.35675 6.69036 6.75616 6.84155 7.26498 7.42940 8.85937 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.005093 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.961211 B = 5495.884765 C = 5955.389928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.260 3.740 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.547 3.453 14 O -0.597 6.597 15 C -0.176 4.176 16 C -0.035 4.035 17 C -0.171 4.171 18 C 0.219 3.781 19 N -0.849 5.849 20 C -0.001 4.001 21 F -0.140 7.140 22 C -0.085 4.085 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.026 0.974 29 H -0.001 1.001 30 H 0.268 0.732 31 H 0.127 0.873 32 H 0.170 0.830 33 H 0.418 0.582 34 H 0.410 0.590 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 -13.259 18.372 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.139 3.861 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.196 1.196 13 C 0.337 3.663 14 O -0.479 6.479 15 C -0.182 4.182 16 C -0.055 4.055 17 C -0.194 4.194 18 C 0.109 3.891 19 N -0.388 5.388 20 C -0.025 4.025 21 F -0.119 7.119 22 C -0.104 4.104 23 H 0.119 0.881 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.187 0.813 33 H 0.250 0.750 34 H 0.240 0.760 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.792 -12.603 18.205 22.214 hybrid contribution 0.428 0.173 -0.648 0.795 sum -1.364 -12.430 17.557 21.555 Atomic orbital electron populations 1.22296 0.94557 1.03717 1.01955 1.21930 0.95373 0.81747 1.03898 1.48186 1.62221 1.14891 1.07118 1.18769 0.96223 0.90932 0.80140 1.21700 1.00203 1.30134 1.06323 0.92820 1.25870 1.01526 0.94312 0.97331 1.70055 1.36723 1.32015 1.17976 0.85384 0.78835 0.78129 0.78272 1.18807 1.20560 1.19642 1.18793 0.76656 0.86523 0.84363 1.90705 1.51818 1.18279 1.87120 1.19366 0.98886 1.03212 0.96713 1.21056 0.96136 0.96011 0.92294 1.20626 0.99812 0.99989 0.98982 1.17908 0.92169 0.91587 0.87390 1.42282 1.26694 1.48676 1.21152 1.16853 0.87865 1.00163 0.97571 1.91443 1.56798 1.70788 1.92874 1.21564 0.99238 0.93643 0.95962 0.88071 0.92424 0.93013 0.90740 0.88425 0.95643 0.98247 0.92355 0.85498 0.81277 0.75004 0.75993 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.14 71.98 0.66 -3.97 16 2 C 0.09 3.14 5.59 86.38 0.48 3.63 16 3 N -0.59 -27.09 2.46 -829.93 -2.04 -29.13 16 4 C 0.26 14.60 5.22 85.63 0.45 15.05 16 5 C -0.55 -32.19 9.39 25.60 0.24 -31.95 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.50 5.46 84.66 0.46 0.97 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.55 25.14 7.25 86.69 0.63 25.77 16 14 O -0.60 -33.24 16.54 -4.03 -0.07 -33.31 16 15 C -0.18 -6.06 5.08 -20.08 -0.10 -6.16 16 16 C -0.04 -1.02 9.68 22.50 0.22 -0.80 16 17 C -0.17 -3.45 9.87 22.35 0.22 -3.23 16 18 C 0.22 4.20 6.76 38.46 0.26 4.46 16 19 N -0.85 -9.42 9.06 -51.23 -0.46 -9.88 16 20 C 0.00 -0.01 7.30 22.44 0.16 0.15 16 21 F -0.14 -3.08 16.62 44.97 0.75 -2.33 16 22 C -0.08 -2.38 7.38 22.55 0.17 -2.21 16 23 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.06 1.59 6.32 -2.39 -0.02 1.58 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 2.60 8.13 -2.39 -0.02 2.58 16 27 H 0.10 2.87 5.10 -2.38 -0.01 2.86 16 28 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.00 -0.04 7.35 -2.38 -0.02 -0.06 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.42 2.39 8.83 -92.71 -0.82 1.57 16 34 H 0.41 3.80 8.29 -92.71 -0.77 3.03 16 35 H 0.15 4.15 3.71 -2.91 -0.01 4.14 16 Total: -1.00 -76.52 301.26 3.89 -72.62 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.44 Total: 9.60 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 3.85 Total: 1.69 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -2.22 Total: -95.66 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.07 Total: -33.31 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.75 Total: -2.33 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.52 3.89 -72.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054413216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.523 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds