Wall clock time and date at job start Mon Mar 30 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 N 1.46504 * 109.46957 * 119.99933 * 2 1 3 5 5 C 1.35237 * 125.99621 * 275.00052 * 4 2 1 6 6 C 1.35841 * 107.64279 * 180.02562 * 5 4 2 7 7 N 1.40505 * 126.11116 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99654 * 179.97438 * 7 6 5 9 9 O 1.21494 * 120.00273 * 0.02562 * 8 7 6 10 10 C 1.48736 * 119.99987 * 180.02562 * 8 7 6 11 11 O 1.21507 * 119.99903 * 0.02562 * 10 8 7 12 12 N 1.34773 * 119.99958 * 179.73002 * 10 8 7 13 13 C 1.36145 * 119.99998 * 180.02562 * 12 10 8 14 14 H 1.07998 * 119.99584 * 359.97438 * 13 12 10 15 15 C 1.39563 * 120.00068 * 179.97438 * 13 12 10 16 16 N 1.31026 * 119.99963 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47145 * 59.99879 * 17 15 13 19 19 H 1.48495 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47229 * 300.00070 * 17 15 13 21 21 C 1.40325 * 107.77439 * 0.26213 * 6 5 4 22 22 N 1.30826 * 108.21353 * 359.55466 * 21 6 5 23 23 H 1.09004 * 109.47179 * 300.00242 * 1 2 3 24 24 H 1.08998 * 109.46730 * 60.00164 * 1 2 3 25 25 H 1.08993 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47443 * 239.99546 * 2 1 3 27 27 H 1.08998 * 109.47111 * 299.99603 * 3 2 1 28 28 H 1.09004 * 109.47218 * 59.99782 * 3 2 1 29 29 H 1.09007 * 109.47517 * 180.02562 * 3 2 1 30 30 H 1.08008 * 126.17873 * 0.06542 * 5 4 2 31 31 H 0.96996 * 120.00458 * 0.02562 * 7 6 5 32 32 H 0.97004 * 120.00018 * 359.97438 * 12 10 8 33 33 H 0.97009 * 119.99725 * 180.02562 * 16 15 13 34 34 H 1.07998 * 125.89862 * 179.73812 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1933 -0.1372 2.4177 6 6 2.6587 -1.1077 3.2465 7 7 2.9734 -0.9538 4.6072 8 6 3.4281 -2.0056 5.3167 9 8 3.5664 -3.0866 4.7797 10 6 3.7607 -1.8430 6.7573 11 8 3.6219 -0.7620 7.2945 12 7 4.2103 -2.8960 7.4682 13 6 4.5142 -2.7473 8.7869 14 1 4.3954 -1.7853 9.2632 15 6 4.9792 -3.8379 9.5232 16 7 5.1229 -5.0051 8.9454 17 14 5.3969 -3.6336 11.3324 18 1 4.1882 -3.1903 12.0725 19 1 5.8649 -4.9313 11.8819 20 1 6.4690 -2.6170 11.4812 21 6 2.7754 -2.2896 2.4991 22 7 2.3863 -2.0397 1.2753 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.9977 0.8905 2.6860 31 1 2.8626 -0.0909 5.0361 32 1 4.3166 -3.7601 7.0404 33 1 5.4458 -5.7632 9.4573 34 1 3.1233 -3.2421 2.8708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061683754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:50 Heat of formation + Delta-G solvation = -16.269920 kcal Electronic energy + Delta-G solvation = -19384.224963 eV Core-core repulsion = 16125.160991 eV Total energy + Delta-G solvation = -3259.063972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.51291 -41.11388 -39.14131 -36.90141 -36.37873 -35.33099 -33.44563 -31.24860 -30.08399 -28.18327 -27.79951 -25.23553 -23.88634 -22.35782 -21.44896 -20.68428 -20.15451 -18.99662 -18.14764 -17.44719 -16.75752 -16.70764 -16.19267 -16.13796 -15.77732 -15.53524 -14.99444 -14.75852 -14.61562 -13.96981 -13.81100 -13.65694 -13.16264 -13.05201 -12.95060 -12.56783 -12.40807 -12.23281 -12.14827 -12.09357 -11.81789 -11.76441 -11.64419 -10.41419 -10.27182 -10.24169 -8.78383 -8.65473 -6.09956 0.38781 0.89966 1.34241 1.44556 1.47780 1.56523 1.79030 1.88247 2.30705 2.45656 3.16780 3.25802 3.56888 3.84154 3.95146 4.00158 4.10540 4.14156 4.46897 4.51581 4.68910 4.76450 4.85150 4.94774 5.05029 5.21765 5.25984 5.27101 5.67693 5.72512 6.06835 6.16434 6.36975 6.62239 6.83121 7.02282 7.27452 7.79113 8.49961 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056705 B = 0.003460 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.662670 B = 8089.397997 C = 8422.005887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 C -0.159 4.159 4 N -0.355 5.355 5 C 0.049 3.951 6 C -0.030 4.030 7 N -0.605 5.605 8 C 0.517 3.483 9 O -0.552 6.552 10 C 0.395 3.605 11 O -0.615 6.615 12 N -0.507 5.507 13 C -0.344 4.344 14 H 0.102 0.898 15 C -0.004 4.004 16 N -0.895 5.895 17 Si 1.010 2.990 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.263 1.263 21 C 0.030 3.970 22 N -0.313 5.313 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.218 0.782 31 H 0.428 0.572 32 H 0.401 0.599 33 H 0.289 0.711 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 11.770 -15.481 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 C -0.217 4.217 4 N -0.140 5.140 5 C -0.101 4.101 6 C -0.134 4.134 7 N -0.252 5.252 8 C 0.301 3.699 9 O -0.430 6.430 10 C 0.180 3.820 11 O -0.505 6.505 12 N -0.140 5.140 13 C -0.474 4.474 14 H 0.119 0.881 15 C -0.209 4.209 16 N -0.532 5.532 17 Si 0.831 3.169 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.188 1.188 21 C -0.155 4.155 22 N -0.136 5.136 23 H 0.085 0.915 24 H 0.124 0.876 25 H 0.064 0.936 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.235 0.765 31 H 0.267 0.733 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.308 11.077 -16.735 21.358 hybrid contribution 0.450 -0.213 1.645 1.718 sum -6.858 10.864 -15.091 19.819 Atomic orbital electron populations 1.22235 0.92468 1.02528 1.04592 1.21698 0.95675 0.93860 0.83957 1.22220 1.01896 0.92155 1.05470 1.48917 1.49656 1.06407 1.09026 1.22236 1.02940 1.00012 0.84902 1.18024 1.14180 0.95827 0.85411 1.42206 1.62403 1.13534 1.07020 1.20117 0.77957 0.84029 0.87773 1.90586 1.53625 1.27043 1.71723 1.19259 0.89495 0.85879 0.87390 1.90552 1.61411 1.26552 1.71937 1.41630 1.51327 1.11019 1.10072 1.19983 1.43354 0.98759 0.85325 0.88051 1.26555 0.94892 0.93570 1.05863 1.69556 1.41776 1.01621 1.40252 0.84746 0.79260 0.78313 0.74584 1.18774 1.19231 1.18758 1.24336 1.00882 1.00098 0.90193 1.77301 1.21313 0.95239 1.19717 0.91546 0.87615 0.93642 0.87913 0.87390 0.90377 0.92255 0.76530 0.73337 0.76375 0.90059 0.79830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.52 71.98 0.69 -1.14 16 2 C 0.15 2.08 3.93 44.99 0.18 2.26 16 3 C -0.16 -1.28 8.83 71.98 0.64 -0.65 16 4 N -0.36 -8.32 3.53 -326.82 -1.15 -9.48 16 5 C 0.05 1.12 10.63 83.61 0.89 2.00 16 6 C -0.03 -0.97 6.90 37.70 0.26 -0.71 16 7 N -0.61 -21.31 5.46 -305.91 -1.67 -22.97 16 8 C 0.52 22.83 7.83 87.05 0.68 23.52 16 9 O -0.55 -25.99 13.62 -3.70 -0.05 -26.04 16 10 C 0.39 20.09 7.81 87.05 0.68 20.77 16 11 O -0.61 -32.77 16.03 -3.74 -0.06 -32.83 16 12 N -0.51 -27.62 5.25 -308.97 -1.62 -29.24 16 13 C -0.34 -19.20 9.67 84.34 0.82 -18.38 16 14 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 15 C 0.00 -0.22 5.51 85.13 0.47 0.25 16 16 N -0.89 -47.96 13.03 21.76 0.28 -47.67 16 17 Si 1.01 40.40 29.56 68.60 2.03 42.42 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 C 0.03 1.09 10.84 85.35 0.93 2.01 16 22 N -0.31 -10.01 12.56 -56.73 -0.71 -10.73 16 23 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.50 7.16 -2.38 -0.02 0.48 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.22 2.92 7.27 -2.91 -0.02 2.90 16 31 H 0.43 13.19 8.28 -92.71 -0.77 12.42 16 32 H 0.40 22.15 7.35 -92.71 -0.68 21.46 16 33 H 0.29 14.24 8.30 -92.70 -0.77 13.47 16 34 H 0.19 7.32 5.92 -2.91 -0.02 7.30 16 Total: -1.00 -69.92 302.10 2.97 -66.95 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.29 Total: 39.66 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 6.22 Total: 29.93 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -4.87 Total: -120.09 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.11 Total: -58.87 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -69.92 2.97 -66.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061683754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.679 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds