Wall clock time and date at job start Mon Mar 30 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99609 * 2 1 4 4 C 1.50699 * 109.47174 * 270.00252 * 3 2 1 5 5 N 1.30500 * 125.64782 * 270.27812 * 4 3 2 6 6 C 1.34128 * 109.25557 * 180.14729 * 5 4 3 7 7 C 1.34664 * 108.02217 * 359.61313 * 6 5 4 8 8 N 1.35041 * 125.65376 * 89.99835 * 4 3 2 9 9 C 1.46504 * 126.39537 * 0.02562 * 8 4 3 10 10 C 1.34769 * 120.00100 * 179.97438 * 2 1 3 11 11 O 1.21444 * 119.99995 * 176.46179 * 10 2 1 12 12 C 1.48826 * 120.00062 * 356.46277 * 10 2 1 13 13 O 1.21494 * 120.00150 * 5.93685 * 12 10 2 14 14 N 1.34778 * 119.99744 * 185.93328 * 12 10 2 15 15 C 1.36123 * 119.99698 * 179.97438 * 14 12 10 16 16 H 1.07997 * 120.00444 * 0.02562 * 15 14 12 17 17 C 1.39590 * 119.99863 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00001 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47358 * 90.00177 * 19 17 15 21 21 H 1.48499 * 109.47050 * 210.00336 * 19 17 15 22 22 H 1.48499 * 109.47141 * 330.00096 * 19 17 15 23 23 H 1.08995 * 109.47199 * 95.98937 * 1 2 3 24 24 H 1.09004 * 109.46972 * 215.99068 * 1 2 3 25 25 H 1.09004 * 109.47112 * 335.98745 * 1 2 3 26 26 H 1.09002 * 109.47258 * 150.00199 * 3 2 1 27 27 H 1.09003 * 109.47360 * 30.00072 * 3 2 1 28 28 H 1.08003 * 125.99129 * 179.88637 * 6 5 4 29 29 H 1.07995 * 126.59432 * 180.24614 * 7 6 5 30 30 H 1.08992 * 109.47405 * 270.02204 * 9 8 4 31 31 H 1.09000 * 109.46684 * 30.02364 * 9 8 4 32 32 H 1.09003 * 109.46939 * 150.02256 * 9 8 4 33 33 H 0.96999 * 120.00370 * 0.02562 * 14 12 10 34 34 H 0.97004 * 120.00236 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 7 3.4912 1.3891 -2.1396 6 6 3.3802 1.9540 -3.3511 7 6 2.2208 2.6380 -3.3871 8 7 1.6294 2.4797 -2.1629 9 6 0.3473 3.0465 -1.7369 10 6 2.1389 -1.1671 0.0005 11 8 3.3516 -1.1681 -0.0644 12 6 1.3969 -2.4548 0.0806 13 8 0.1828 -2.4600 0.0367 14 7 2.0719 -3.6150 0.2018 15 6 1.3933 -4.7927 0.2755 16 1 0.3140 -4.7974 0.2366 17 6 2.0924 -5.9944 0.4005 18 7 3.4017 -5.9888 0.4472 19 14 1.1611 -7.6106 0.5010 20 1 0.9646 -8.1547 -0.8667 21 1 1.9393 -8.5807 1.3125 22 1 -0.1610 -7.3814 1.1372 23 1 -0.3633 -0.1072 -1.0220 24 1 -0.3633 -0.8315 0.6039 25 1 -0.3633 0.9388 0.4182 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0285 0.5138 28 1 4.0934 1.8709 -4.1579 29 1 1.8322 3.2027 -4.2216 30 1 -0.4552 2.3479 -1.9731 31 1 0.3685 3.2256 -0.6620 32 1 0.1749 3.9878 -2.2588 33 1 3.0413 -3.6108 0.2371 34 1 3.8875 -6.8239 0.5344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062255344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:11 Heat of formation + Delta-G solvation = 13.488580 kcal Electronic energy + Delta-G solvation = -20142.838671 eV Core-core repulsion = 16885.065125 eV Total energy + Delta-G solvation = -3257.773547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.00450 -39.57306 -37.21788 -35.48789 -34.10358 -33.90494 -31.42266 -30.56917 -27.52834 -26.62557 -26.41072 -25.16944 -22.29104 -21.28027 -19.91988 -18.88805 -18.07654 -17.13758 -16.59675 -16.19522 -15.58291 -15.17565 -14.92049 -14.46834 -14.12893 -13.85554 -13.74191 -13.27976 -13.07348 -12.87249 -12.79987 -12.44812 -12.26316 -12.00484 -11.82737 -11.58217 -11.17758 -10.49834 -10.39836 -10.15171 -9.75594 -9.69932 -9.53256 -8.52388 -8.39617 -8.20385 -7.90264 -6.65254 -3.97907 1.99382 2.47842 2.79124 3.05590 3.16194 3.18735 3.23652 3.59656 4.06136 4.25235 4.50338 4.55131 4.75699 4.87942 4.91754 5.11358 5.19560 5.22499 5.44409 5.49786 5.63464 5.83386 6.00228 6.05213 6.29138 6.46807 6.83005 6.86628 7.19671 7.32354 7.61086 7.79742 8.27293 8.33902 8.62724 8.97376 9.33628 9.86549 10.49428 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.004545 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.449890 B = 6159.322410 C = 6500.574961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.201 3.799 4 C 0.191 3.809 5 N -0.463 5.463 6 C -0.030 4.030 7 C -0.063 4.063 8 N -0.457 5.457 9 C 0.071 3.929 10 C 0.513 3.487 11 O -0.522 6.522 12 C 0.395 3.605 13 O -0.592 6.592 14 N -0.496 5.496 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.867 5.867 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.045 0.955 24 H 0.120 0.880 25 H 0.047 0.953 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 16.385 -2.726 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C 0.076 3.924 4 C -0.072 4.072 5 N -0.181 5.181 6 C -0.179 4.179 7 C -0.196 4.196 8 N -0.141 5.141 9 C -0.072 4.072 10 C 0.299 3.701 11 O -0.396 6.396 12 C 0.180 3.820 13 O -0.482 6.482 14 N -0.130 5.130 15 C -0.437 4.437 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.064 0.936 24 H 0.138 0.862 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.185 0.815 29 H 0.189 0.811 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.241 0.759 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.911 15.777 -2.442 16.703 hybrid contribution -0.577 -0.085 -0.604 0.840 sum -5.488 15.691 -3.046 16.900 Atomic orbital electron populations 1.22382 0.78113 1.03284 1.02952 1.47622 1.07639 1.04198 1.74124 1.19657 0.99807 0.85651 0.87334 1.23867 0.88777 0.97101 0.97486 1.70380 1.22413 1.21559 1.03795 1.22369 0.97962 1.00972 0.96576 1.22650 0.97905 1.09346 0.89723 1.45348 1.17814 1.39025 1.11920 1.22058 0.83493 0.99593 1.02057 1.20739 0.87491 0.85493 0.76389 1.90744 1.13893 1.87293 1.47680 1.18875 0.87776 0.84287 0.91042 1.90436 1.12991 1.85617 1.59154 1.41572 1.10589 1.04552 1.56290 1.19869 0.94016 0.82278 1.47532 0.86965 1.25594 0.95606 1.00463 0.95901 1.69490 1.06534 1.29620 1.44824 0.85724 0.79378 0.79799 0.78653 1.19925 1.20514 1.18912 0.93642 0.86186 0.93411 0.86922 0.89315 0.81489 0.81081 0.90350 0.89580 0.89747 0.75944 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.59 59.85 0.57 1.73 16 2 N -0.60 -10.76 2.86 -183.70 -0.52 -11.29 16 3 C 0.20 2.99 5.72 -5.19 -0.03 2.96 16 4 C 0.19 3.06 7.48 -155.42 -1.16 1.89 16 5 N -0.46 -8.68 11.25 -10.82 -0.12 -8.80 16 6 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 7 C -0.06 -0.77 11.58 -16.56 -0.19 -0.96 16 8 N -0.46 -5.69 3.15 -121.28 -0.38 -6.08 16 9 C 0.07 0.53 10.97 59.85 0.66 1.19 16 10 C 0.51 11.66 7.71 -11.88 -0.09 11.57 16 11 O -0.52 -12.96 16.09 5.41 0.09 -12.88 16 12 C 0.40 10.03 7.70 -11.88 -0.09 9.94 16 13 O -0.59 -15.30 12.69 5.37 0.07 -15.23 16 14 N -0.50 -13.45 5.24 -11.59 -0.06 -13.51 16 15 C -0.31 -8.45 9.67 -15.14 -0.15 -8.60 16 16 H 0.11 3.13 7.15 -52.49 -0.38 2.76 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 18 N -0.87 -23.49 13.03 55.53 0.72 -22.77 16 19 Si 0.94 20.12 29.56 -169.99 -5.02 15.10 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.12 2.19 5.35 -51.94 -0.28 1.92 16 25 H 0.05 0.52 7.83 -51.93 -0.41 0.11 16 26 H 0.11 1.82 7.47 -51.93 -0.39 1.43 16 27 H 0.09 0.91 6.78 -51.93 -0.35 0.56 16 28 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.52 7.05 -51.93 -0.37 0.15 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.41 11.19 7.36 -40.82 -0.30 10.89 16 34 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -34.32 300.83 -5.21 -39.53 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.71 Total: 11.59 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: -0.79 Total: 19.79 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.37 Total: -62.44 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: 0.16 Total: -28.11 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.32 -5.21 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062255344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.016 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds