Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99609 * 2 1 4 4 C 1.50699 * 109.47174 * 270.00252 * 3 2 1 5 5 N 1.30500 * 125.64782 * 270.27812 * 4 3 2 6 6 C 1.34128 * 109.25557 * 180.14729 * 5 4 3 7 7 C 1.34664 * 108.02217 * 359.61313 * 6 5 4 8 8 N 1.35041 * 125.65376 * 89.99835 * 4 3 2 9 9 C 1.46504 * 126.39537 * 0.02562 * 8 4 3 10 10 C 1.34769 * 120.00100 * 179.97438 * 2 1 3 11 11 O 1.21444 * 119.99995 * 176.46179 * 10 2 1 12 12 C 1.48826 * 120.00062 * 356.46277 * 10 2 1 13 13 O 1.21494 * 120.00150 * 5.93685 * 12 10 2 14 14 N 1.34778 * 119.99744 * 185.93328 * 12 10 2 15 15 C 1.36123 * 119.99698 * 179.97438 * 14 12 10 16 16 H 1.07997 * 120.00444 * 0.02562 * 15 14 12 17 17 C 1.39590 * 119.99863 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00001 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47358 * 90.00177 * 19 17 15 21 21 H 1.48499 * 109.47050 * 210.00336 * 19 17 15 22 22 H 1.48499 * 109.47141 * 330.00096 * 19 17 15 23 23 H 1.08995 * 109.47199 * 95.98937 * 1 2 3 24 24 H 1.09004 * 109.46972 * 215.99068 * 1 2 3 25 25 H 1.09004 * 109.47112 * 335.98745 * 1 2 3 26 26 H 1.09002 * 109.47258 * 150.00199 * 3 2 1 27 27 H 1.09003 * 109.47360 * 30.00072 * 3 2 1 28 28 H 1.08003 * 125.99129 * 179.88637 * 6 5 4 29 29 H 1.07995 * 126.59432 * 180.24614 * 7 6 5 30 30 H 1.08992 * 109.47405 * 270.02204 * 9 8 4 31 31 H 1.09000 * 109.46684 * 30.02364 * 9 8 4 32 32 H 1.09003 * 109.46939 * 150.02256 * 9 8 4 33 33 H 0.96999 * 120.00370 * 0.02562 * 14 12 10 34 34 H 0.97004 * 120.00236 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 7 3.4912 1.3891 -2.1396 6 6 3.3802 1.9540 -3.3511 7 6 2.2208 2.6380 -3.3871 8 7 1.6294 2.4797 -2.1629 9 6 0.3473 3.0465 -1.7369 10 6 2.1389 -1.1671 0.0005 11 8 3.3516 -1.1681 -0.0644 12 6 1.3969 -2.4548 0.0806 13 8 0.1828 -2.4600 0.0367 14 7 2.0719 -3.6150 0.2018 15 6 1.3933 -4.7927 0.2755 16 1 0.3140 -4.7974 0.2366 17 6 2.0924 -5.9944 0.4005 18 7 3.4017 -5.9888 0.4472 19 14 1.1611 -7.6106 0.5010 20 1 0.9646 -8.1547 -0.8667 21 1 1.9393 -8.5807 1.3125 22 1 -0.1610 -7.3814 1.1372 23 1 -0.3633 -0.1072 -1.0220 24 1 -0.3633 -0.8315 0.6039 25 1 -0.3633 0.9388 0.4182 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0285 0.5138 28 1 4.0934 1.8709 -4.1579 29 1 1.8322 3.2027 -4.2216 30 1 -0.4552 2.3479 -1.9731 31 1 0.3685 3.2256 -0.6620 32 1 0.1749 3.9878 -2.2588 33 1 3.0413 -3.6108 0.2371 34 1 3.8875 -6.8239 0.5344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062255344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = -12.211378 kcal Electronic energy + Delta-G solvation = -20143.953105 eV Core-core repulsion = 16885.065125 eV Total energy + Delta-G solvation = -3258.887981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.04609 -41.36361 -39.12426 -37.15739 -35.96439 -34.89307 -33.45092 -31.76845 -28.56953 -28.17781 -27.52439 -26.88284 -24.01005 -22.29159 -21.28711 -20.56808 -19.93292 -18.36175 -18.16366 -17.72494 -17.08608 -16.65100 -16.55267 -15.80644 -15.64423 -15.36303 -15.15696 -14.71619 -14.42715 -14.02678 -13.88556 -13.69036 -13.63001 -13.46102 -13.17696 -12.96721 -12.87862 -12.54156 -12.09283 -12.00424 -11.62980 -10.87378 -10.53866 -10.27945 -10.01698 -9.87912 -9.34043 -8.64078 -6.09281 0.61014 0.95260 1.41408 1.47645 1.56558 1.73944 1.92675 2.22046 2.35701 2.38831 3.13094 3.16566 3.45075 3.82582 3.98342 3.99213 4.18426 4.32015 4.40838 4.51392 4.57126 4.72327 4.74150 4.79815 5.10721 5.26775 5.31276 5.48668 5.69203 5.82871 6.03904 6.24946 6.34200 6.78752 6.98977 7.21008 7.29404 7.81047 8.51902 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.004545 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.449890 B = 6159.322410 C = 6500.574961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.585 5.585 3 C 0.200 3.800 4 C 0.166 3.834 5 N -0.525 5.525 6 C -0.072 4.072 7 C -0.036 4.036 8 N -0.449 5.449 9 C 0.058 3.942 10 C 0.511 3.489 11 O -0.552 6.552 12 C 0.393 3.607 13 O -0.599 6.599 14 N -0.514 5.514 15 C -0.343 4.343 16 H 0.102 0.898 17 C -0.007 4.007 18 N -0.899 5.899 19 Si 1.012 2.988 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.260 1.260 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.176 0.824 29 H 0.216 0.784 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 18.217 -2.990 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.319 5.319 3 C 0.077 3.923 4 C -0.098 4.098 5 N -0.244 5.244 6 C -0.220 4.220 7 C -0.171 4.171 8 N -0.132 5.132 9 C -0.083 4.083 10 C 0.296 3.704 11 O -0.430 6.430 12 C 0.178 3.822 13 O -0.489 6.489 14 N -0.148 5.148 15 C -0.473 4.473 16 H 0.120 0.880 17 C -0.211 4.211 18 N -0.537 5.537 19 Si 0.832 3.168 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.184 1.184 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.163 0.837 28 H 0.194 0.806 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.165 17.667 -2.694 19.254 hybrid contribution 0.046 -0.443 -0.583 0.734 sum -7.119 17.224 -3.277 18.923 Atomic orbital electron populations 1.22406 0.76268 1.05359 1.02556 1.47658 1.08788 1.03865 1.71560 1.19929 0.99692 0.84976 0.87737 1.23741 0.89461 0.98728 0.97837 1.70262 1.24850 1.23525 1.05792 1.22758 1.00190 1.02761 0.96269 1.23279 0.96336 1.07181 0.90320 1.45595 1.18640 1.37623 1.11331 1.22505 0.80982 1.00832 1.03932 1.20307 0.87029 0.86124 0.76979 1.90730 1.14914 1.87774 1.49559 1.19512 0.87972 0.85119 0.89599 1.90436 1.13330 1.86294 1.58820 1.41697 1.10202 1.05264 1.57591 1.19993 0.93794 0.83360 1.50150 0.88014 1.26582 0.96449 1.03584 0.94485 1.69572 1.07984 1.30981 1.45166 0.84672 0.78115 0.75002 0.78974 1.19195 1.19215 1.18410 0.94021 0.89129 0.87369 0.88916 0.83718 0.80634 0.76716 0.89851 0.87520 0.86662 0.76792 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 9.59 127.77 1.22 3.36 16 2 N -0.58 -20.32 2.86 -853.42 -2.44 -22.76 16 3 C 0.20 5.59 5.72 85.63 0.49 6.08 16 4 C 0.17 5.06 7.48 138.13 1.03 6.09 16 5 N -0.52 -19.86 11.25 -188.14 -2.12 -21.97 16 6 C -0.07 -2.12 11.87 83.52 0.99 -1.13 16 7 C -0.04 -0.78 11.58 83.08 0.96 0.18 16 8 N -0.45 -9.68 3.15 -537.62 -1.69 -11.37 16 9 C 0.06 0.58 10.97 127.77 1.40 1.98 16 10 C 0.51 23.76 7.71 87.08 0.67 24.43 16 11 O -0.55 -28.60 16.09 -3.54 -0.06 -28.66 16 12 C 0.39 20.58 7.70 87.08 0.67 21.25 16 13 O -0.60 -31.55 12.69 -3.70 -0.05 -31.60 16 14 N -0.51 -29.09 5.24 -308.88 -1.62 -30.71 16 15 C -0.34 -19.57 9.67 84.35 0.82 -18.76 16 16 H 0.10 5.87 7.15 -2.91 -0.02 5.85 16 17 C -0.01 -0.38 5.51 85.14 0.47 0.09 16 18 N -0.90 -49.83 13.03 21.77 0.28 -49.54 16 19 Si 1.01 41.34 29.56 68.60 2.03 43.37 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.09 3.21 5.35 -2.55 -0.01 3.20 16 25 H 0.11 1.78 7.83 -2.38 -0.02 1.76 16 26 H 0.09 2.99 7.47 -2.39 -0.02 2.97 16 27 H 0.15 2.32 6.78 -2.39 -0.02 2.30 16 28 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.63 7.05 -2.39 -0.02 0.62 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.40 23.21 7.36 -92.71 -0.68 22.53 16 34 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 Total: -1.00 -79.87 300.83 3.53 -76.34 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.46 Total: 33.34 kcal Atomic # 6 Polarization: 34.84 SS G_CDS: 8.73 Total: 43.57 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -7.59 Total: -136.36 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.10 Total: -60.26 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -79.87 3.53 -76.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062255344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.125 kcal (2) G-P(sol) polarization free energy of solvation -79.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds