Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47457 * 2 1 4 4 C 1.46504 * 120.00107 * 264.50707 * 3 2 1 5 5 C 1.50698 * 109.46615 * 269.99710 * 4 3 2 6 6 H 1.08002 * 120.00743 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99890 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99870 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47511 * 60.00290 * 9 7 5 11 11 H 1.48503 * 109.47062 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47472 * 299.99837 * 9 7 5 13 13 C 1.34778 * 119.99980 * 84.50119 * 3 2 1 14 14 O 1.21611 * 120.00012 * 185.93064 * 13 3 2 15 15 C 1.47320 * 119.99745 * 5.93029 * 13 3 2 16 16 C 1.39806 * 120.17929 * 54.39890 * 15 13 3 17 17 C 1.37640 * 119.94386 * 180.25095 * 16 15 13 18 18 C 1.38904 * 120.32663 * 359.47486 * 17 16 15 19 19 F 1.35097 * 119.81419 * 180.27905 * 18 17 16 20 20 C 1.38244 * 120.37005 * 0.29588 * 18 17 16 21 21 C 1.38829 * 120.04045 * 359.95968 * 20 18 17 22 22 N 1.38876 * 120.16151 * 179.97438 * 21 20 18 23 23 H 1.09007 * 109.46733 * 300.00094 * 1 2 3 24 24 H 1.08999 * 109.47007 * 59.99453 * 1 2 3 25 25 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46905 * 240.00382 * 2 1 3 27 27 H 1.08999 * 109.47007 * 120.00547 * 2 1 3 28 28 H 1.08998 * 109.46814 * 29.99398 * 4 3 2 29 29 H 1.09001 * 109.47011 * 150.00162 * 4 3 2 30 30 H 0.96994 * 120.00011 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.02774 * 0.02562 * 16 15 13 32 32 H 1.08000 * 119.83446 * 179.75065 * 17 16 15 33 33 H 1.07998 * 119.98021 * 179.97438 * 20 18 17 34 34 H 0.97000 * 120.00021 * 355.05706 * 22 21 20 35 35 H 0.97002 * 120.00101 * 175.05604 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0313 -1.2629 5 6 3.8335 1.7827 -1.5598 6 1 4.4322 1.1992 -0.8760 7 6 4.4018 2.3002 -2.7045 8 7 3.6730 3.0112 -3.5370 9 14 6.2069 1.9915 -3.0729 10 1 6.4469 0.5302 -3.1824 11 1 6.5706 2.6506 -4.3530 12 1 7.0384 2.5490 -1.9760 13 6 2.1376 2.0538 1.1618 14 8 2.4391 3.2319 1.1542 15 6 1.9028 1.3618 2.4410 16 6 2.6052 0.1923 2.7467 17 6 2.3782 -0.4532 3.9410 18 6 1.4613 0.0574 4.8510 19 9 1.2507 -0.5815 6.0226 20 6 0.7628 1.2154 4.5643 21 6 0.9759 1.8760 3.3620 22 7 0.2752 3.0393 3.0713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7671 1.6221 -2.0682 29 1 2.2007 3.1039 -1.1823 30 1 4.0729 3.3756 -4.3421 31 1 3.3227 -0.2062 2.0449 32 1 2.9190 -1.3586 4.1736 33 1 0.0511 1.6066 5.2762 34 1 -0.4158 3.3530 3.6753 35 1 0.4769 3.5380 2.2641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062822821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -57.717882 kcal Electronic energy + Delta-G solvation = -20249.651172 eV Core-core repulsion = 16968.869920 eV Total energy + Delta-G solvation = -3280.781252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.91814 -40.05048 -37.85333 -35.46994 -34.32916 -32.84125 -30.75593 -30.08093 -28.87657 -26.94861 -23.91839 -23.21226 -22.48880 -21.88529 -18.94708 -17.80073 -17.37664 -16.71122 -16.39541 -15.75110 -15.51312 -15.23772 -15.15787 -14.49591 -14.26569 -13.95710 -13.31649 -13.28148 -12.94628 -12.76806 -12.53630 -12.16309 -11.97005 -11.66046 -11.26556 -11.19481 -10.95105 -10.82302 -10.61089 -10.36514 -10.14358 -9.68228 -9.08922 -8.70749 -8.45070 -7.73634 -7.56984 -6.06724 -4.11954 1.05798 1.49601 3.23052 3.30799 3.35342 3.38846 3.75296 3.75727 3.97767 4.38415 4.43237 4.79508 4.98168 5.09185 5.27791 5.38825 5.42567 5.59904 5.66866 5.77664 5.94907 5.98905 6.11507 6.20021 6.24007 6.38402 6.50631 6.79269 7.04187 7.39235 7.40403 7.52153 7.74768 7.89518 8.20035 8.37697 8.84808 9.02210 9.53374 11.01186 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.005238 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.225090 B = 5344.096997 C = 5548.171842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.587 5.587 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.558 3.442 14 O -0.544 6.544 15 C -0.205 4.205 16 C -0.012 4.012 17 C -0.220 4.220 18 C 0.156 3.844 19 F -0.141 7.141 20 C -0.246 4.246 21 C 0.286 3.714 22 N -0.858 5.858 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.398 0.602 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -6.924 12.971 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.345 3.655 14 O -0.423 6.423 15 C -0.214 4.214 16 C -0.031 4.031 17 C -0.241 4.241 18 C 0.136 3.864 19 F -0.120 7.120 20 C -0.270 4.270 21 C 0.176 3.824 22 N -0.395 5.395 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.226 0.774 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.650 -6.214 12.756 16.120 hybrid contribution 0.779 -0.018 -0.127 0.790 sum -6.871 -6.232 12.629 15.670 Atomic orbital electron populations 1.22173 0.96803 1.01407 1.02015 1.21610 0.93609 0.84192 1.03043 1.48210 1.62245 1.13239 1.08048 1.19320 0.95446 0.94415 0.78227 1.21397 0.95202 1.33691 1.06489 0.92463 1.24928 0.98225 0.94864 0.95972 1.69921 1.36238 1.34777 1.12368 0.86560 0.84945 0.78355 0.77578 1.20201 1.21171 1.20166 1.17890 0.77897 0.86435 0.83320 1.90752 1.48603 1.15700 1.87248 1.19693 1.04456 0.99944 0.97289 1.20898 0.95722 0.91342 0.95170 1.20732 1.03634 1.04086 0.95642 1.17457 0.96160 0.91221 0.81611 1.91478 1.93823 1.81043 1.45653 1.20305 1.08550 0.99355 0.98787 1.17226 0.88774 0.85828 0.90619 1.42553 1.41499 1.25817 1.29660 0.93137 0.92328 0.92194 0.89858 0.91016 0.94896 0.93736 0.92637 0.84286 0.84818 0.84842 0.77363 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.20 37.16 0.38 -1.93 16 2 C 0.10 1.61 5.89 -4.04 -0.02 1.59 16 3 N -0.59 -12.17 2.47 -176.37 -0.44 -12.61 16 4 C 0.24 6.26 5.18 -5.19 -0.03 6.23 16 5 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.56 11.52 6.45 -12.57 -0.08 11.44 16 14 O -0.54 -13.29 15.33 5.27 0.08 -13.21 16 15 C -0.21 -3.39 4.87 -104.80 -0.51 -3.90 16 16 C -0.01 -0.17 7.59 -39.21 -0.30 -0.47 16 17 C -0.22 -2.75 10.00 -39.55 -0.40 -3.14 16 18 C 0.16 1.98 7.30 -39.33 -0.29 1.69 16 19 F -0.14 -1.77 17.26 2.25 0.04 -1.73 16 20 C -0.25 -3.07 9.85 -39.36 -0.39 -3.46 16 21 C 0.29 4.10 6.75 -83.63 -0.56 3.53 16 22 N -0.86 -10.95 8.95 32.54 0.29 -10.66 16 23 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 27 H 0.07 1.02 4.50 -51.93 -0.23 0.79 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.14 1.91 7.33 -52.49 -0.39 1.53 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.40 3.67 8.84 -40.82 -0.36 3.31 16 35 H 0.41 6.16 6.81 -40.82 -0.28 5.89 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -31.68 304.55 -6.46 -38.15 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.13 Total: 6.15 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.62 Total: -1.77 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.59 Total: -48.74 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.68 -6.46 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062822821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.571 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds