Wall clock time and date at job start Mon Mar 30 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47457 * 2 1 4 4 C 1.46504 * 120.00107 * 264.50707 * 3 2 1 5 5 C 1.50698 * 109.46615 * 269.99710 * 4 3 2 6 6 H 1.08002 * 120.00743 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99890 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99870 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47511 * 60.00290 * 9 7 5 11 11 H 1.48503 * 109.47062 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47472 * 299.99837 * 9 7 5 13 13 C 1.34778 * 119.99980 * 84.50119 * 3 2 1 14 14 O 1.21611 * 120.00012 * 185.93064 * 13 3 2 15 15 C 1.47320 * 119.99745 * 5.93029 * 13 3 2 16 16 C 1.39806 * 120.17929 * 54.39890 * 15 13 3 17 17 C 1.37640 * 119.94386 * 180.25095 * 16 15 13 18 18 C 1.38904 * 120.32663 * 359.47486 * 17 16 15 19 19 F 1.35097 * 119.81419 * 180.27905 * 18 17 16 20 20 C 1.38244 * 120.37005 * 0.29588 * 18 17 16 21 21 C 1.38829 * 120.04045 * 359.95968 * 20 18 17 22 22 N 1.38876 * 120.16151 * 179.97438 * 21 20 18 23 23 H 1.09007 * 109.46733 * 300.00094 * 1 2 3 24 24 H 1.08999 * 109.47007 * 59.99453 * 1 2 3 25 25 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46905 * 240.00382 * 2 1 3 27 27 H 1.08999 * 109.47007 * 120.00547 * 2 1 3 28 28 H 1.08998 * 109.46814 * 29.99398 * 4 3 2 29 29 H 1.09001 * 109.47011 * 150.00162 * 4 3 2 30 30 H 0.96994 * 120.00011 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.02774 * 0.02562 * 16 15 13 32 32 H 1.08000 * 119.83446 * 179.75065 * 17 16 15 33 33 H 1.07998 * 119.98021 * 179.97438 * 20 18 17 34 34 H 0.97000 * 120.00021 * 355.05706 * 22 21 20 35 35 H 0.97002 * 120.00101 * 175.05604 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0313 -1.2629 5 6 3.8335 1.7827 -1.5598 6 1 4.4322 1.1992 -0.8760 7 6 4.4018 2.3002 -2.7045 8 7 3.6730 3.0112 -3.5370 9 14 6.2069 1.9915 -3.0729 10 1 6.4469 0.5302 -3.1824 11 1 6.5706 2.6506 -4.3530 12 1 7.0384 2.5490 -1.9760 13 6 2.1376 2.0538 1.1618 14 8 2.4391 3.2319 1.1542 15 6 1.9028 1.3618 2.4410 16 6 2.6052 0.1923 2.7467 17 6 2.3782 -0.4532 3.9410 18 6 1.4613 0.0574 4.8510 19 9 1.2507 -0.5815 6.0226 20 6 0.7628 1.2154 4.5643 21 6 0.9759 1.8760 3.3620 22 7 0.2752 3.0393 3.0713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7671 1.6221 -2.0682 29 1 2.2007 3.1039 -1.1823 30 1 4.0729 3.3756 -4.3421 31 1 3.3227 -0.2062 2.0449 32 1 2.9190 -1.3586 4.1736 33 1 0.0511 1.6066 5.2762 34 1 -0.4158 3.3530 3.6753 35 1 0.4769 3.5380 2.2641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062822821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:46 Heat of formation + Delta-G solvation = -78.326608 kcal Electronic energy + Delta-G solvation = -20250.544833 eV Core-core repulsion = 16968.869920 eV Total energy + Delta-G solvation = -3281.674914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -49.90841 -41.40886 -39.21615 -37.05476 -35.46310 -34.87937 -32.06148 -31.50150 -30.01001 -28.78099 -25.49613 -24.71722 -23.66603 -23.21622 -20.40400 -18.84583 -18.67978 -18.36097 -18.08763 -17.37063 -16.58606 -16.41003 -16.27913 -16.15851 -15.77417 -15.16210 -14.77240 -14.55266 -14.33420 -13.90702 -13.88532 -13.75539 -13.47201 -13.22953 -13.09488 -12.65872 -12.51924 -12.26908 -12.16919 -11.97481 -11.73556 -11.47841 -10.71573 -10.63049 -9.83817 -9.42098 -8.67364 -8.21225 -6.36397 -0.05919 0.46348 1.38348 1.42285 1.49411 1.77763 2.28702 2.43507 2.66711 2.74465 3.08380 3.35858 3.67214 3.77746 4.14242 4.17762 4.34467 4.43214 4.51460 4.61701 4.82851 4.91503 4.95194 4.98469 5.06259 5.18433 5.24050 5.31640 5.34816 5.57955 5.78521 5.85247 6.06552 6.31540 6.67768 6.73673 6.83568 7.26597 7.43002 8.85413 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.005238 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.225090 B = 5344.096997 C = 5548.171842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.556 3.444 14 O -0.595 6.595 15 C -0.231 4.231 16 C -0.014 4.014 17 C -0.209 4.209 18 C 0.160 3.840 19 F -0.136 7.136 20 C -0.236 4.236 21 C 0.281 3.719 22 N -0.854 5.854 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.023 0.977 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.414 0.586 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -9.013 14.798 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.321 5.321 4 C 0.139 3.861 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.345 3.655 14 O -0.477 6.477 15 C -0.239 4.239 16 C -0.033 4.033 17 C -0.230 4.230 18 C 0.140 3.860 19 F -0.115 7.115 20 C -0.260 4.260 21 C 0.170 3.830 22 N -0.391 5.391 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.545 -8.349 14.619 18.449 hybrid contribution 0.668 0.623 -0.611 1.099 sum -6.877 -7.726 14.008 17.412 Atomic orbital electron populations 1.22091 0.94824 1.03316 1.01210 1.21887 0.95221 0.81703 1.03974 1.48181 1.62349 1.14896 1.06635 1.18775 0.94671 0.92266 0.80341 1.21691 0.96210 1.33756 1.06671 0.92606 1.25838 1.02924 0.94438 0.95747 1.70045 1.38255 1.35591 1.12842 0.85485 0.79032 0.79113 0.77298 1.18373 1.20467 1.20334 1.18537 0.76485 0.85930 0.84521 1.90708 1.50812 1.18088 1.88111 1.19407 1.07266 1.01440 0.95790 1.20910 0.95550 0.90744 0.96137 1.20922 1.03155 1.04448 0.94438 1.17552 0.95773 0.91060 0.81622 1.91501 1.93720 1.80891 1.45346 1.20500 1.08490 0.98869 0.98152 1.17334 0.88590 0.86198 0.90857 1.42548 1.41734 1.25333 1.29491 0.93116 0.93939 0.88827 0.90455 0.88455 0.95941 0.98080 0.92416 0.84129 0.82165 0.82205 0.75431 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.20 71.98 0.73 -3.45 16 2 C 0.09 3.02 5.89 86.38 0.51 3.52 16 3 N -0.59 -25.27 2.47 -830.16 -2.05 -27.31 16 4 C 0.26 14.02 5.18 85.63 0.44 14.46 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.55 5.46 84.65 0.46 1.02 16 8 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 9 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 C 0.56 23.63 6.45 86.63 0.56 24.18 16 14 O -0.59 -30.56 15.33 -4.07 -0.06 -30.62 16 15 C -0.23 -7.44 4.87 -19.98 -0.10 -7.53 16 16 C -0.01 -0.38 7.59 22.51 0.17 -0.21 16 17 C -0.21 -4.50 10.00 22.29 0.22 -4.28 16 18 C 0.16 3.50 7.30 22.43 0.16 3.66 16 19 F -0.14 -2.87 17.26 44.97 0.78 -2.09 16 20 C -0.24 -5.16 9.85 22.41 0.22 -4.94 16 21 C 0.28 7.64 6.75 38.70 0.26 7.90 16 22 N -0.85 -21.29 8.95 -50.97 -0.46 -21.75 16 23 H 0.05 1.36 8.03 -2.38 -0.02 1.34 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 27 H 0.10 2.61 4.50 -2.39 -0.01 2.60 16 28 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.00 0.07 7.35 -2.39 -0.02 0.05 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.14 3.64 7.33 -2.91 -0.02 3.62 16 32 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.41 7.08 8.84 -92.71 -0.82 6.26 16 35 H 0.40 12.35 6.81 -92.71 -0.63 11.72 16 Total: -1.00 -70.70 304.55 4.09 -66.61 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.32 Total: 20.70 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 3.89 Total: 3.46 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -2.22 Total: -104.59 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.70 4.09 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062822821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.716 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.07 seconds