Wall clock time and date at job start Mon Mar 30 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47462 * 2 1 4 4 H 1.09002 * 109.46597 * 55.00194 * 3 2 1 5 5 C 1.50697 * 109.47370 * 174.99669 * 3 2 1 6 6 H 1.08010 * 119.99575 * 120.00029 * 5 3 2 7 7 C 1.37875 * 120.00378 * 300.00295 * 5 3 2 8 8 N 1.31514 * 119.99834 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00003 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46914 * 89.99811 * 9 7 5 11 11 H 1.48500 * 109.47011 * 209.99871 * 9 7 5 12 12 H 1.48502 * 109.46876 * 330.00055 * 9 7 5 13 13 N 1.46500 * 109.47085 * 295.00237 * 3 2 1 14 14 C 1.34774 * 120.00097 * 84.99872 * 13 3 2 15 15 O 1.21620 * 120.00049 * 359.97438 * 14 13 3 16 16 C 1.47322 * 120.00063 * 179.97438 * 14 13 3 17 17 C 1.39796 * 120.17907 * 354.06779 * 16 14 13 18 18 C 1.37644 * 119.94791 * 179.97438 * 17 16 14 19 19 C 1.38898 * 120.32421 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.81567 * 180.02562 * 19 18 17 21 21 C 1.38248 * 120.37044 * 0.03744 * 19 18 17 22 22 C 1.38829 * 120.03895 * 359.70877 * 21 19 18 23 23 N 1.38878 * 120.16151 * 180.26803 * 22 21 19 24 24 H 1.09000 * 109.47283 * 59.99556 * 1 2 3 25 25 H 1.08999 * 109.47341 * 299.99792 * 1 2 3 26 26 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47283 * 120.00443 * 2 1 3 28 28 H 1.08999 * 109.47341 * 240.00208 * 2 1 3 29 29 H 0.97002 * 119.99725 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99553 * 264.99232 * 13 3 2 31 31 H 1.07999 * 120.02838 * 359.97438 * 17 16 14 32 32 H 1.08003 * 119.83251 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.97525 * 179.97438 * 21 19 18 34 34 H 0.96994 * 120.00384 * 185.73465 * 23 22 21 35 35 H 0.97002 * 119.99664 * 5.73408 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4539 0.8795 1.3358 9 14 3.0963 0.1099 2.5708 10 1 2.8744 -1.3261 2.2646 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8093 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4317 16 6 0.0456 3.3236 -2.6255 17 6 0.9762 3.4727 -3.6580 18 6 0.6070 4.0889 -4.8322 19 6 -0.6877 4.5639 -4.9979 20 9 -1.0391 5.1666 -6.1548 21 6 -1.6186 4.4237 -3.9854 22 6 -1.2641 3.8000 -2.7969 23 7 -2.1988 3.6529 -1.7803 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 5.8770 0.4816 2.1128 30 1 2.2720 2.1231 -1.9977 31 1 1.9841 3.1048 -3.5345 32 1 1.3276 4.2034 -5.6285 33 1 -2.6234 4.7959 -4.1209 34 1 -1.9284 3.2927 -0.9212 35 1 -3.1220 3.9103 -1.9294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062823499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:27 Heat of formation + Delta-G solvation = -74.809699 kcal Electronic energy + Delta-G solvation = -20145.768205 eV Core-core repulsion = 16864.245796 eV Total energy + Delta-G solvation = -3281.522409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94573 -41.41508 -39.36109 -37.14192 -35.49339 -34.31813 -33.42713 -31.50170 -29.92541 -29.17299 -25.08715 -24.39750 -23.50611 -22.32291 -21.35020 -19.48374 -18.80411 -18.36187 -17.94441 -17.28770 -16.68519 -16.62044 -16.22814 -16.11537 -15.89976 -15.42118 -15.03708 -14.62675 -14.23963 -13.93798 -13.91631 -13.77094 -13.61505 -13.43593 -12.93919 -12.74694 -12.38148 -12.26440 -11.83585 -11.58601 -11.36400 -11.21895 -10.85210 -10.69503 -9.95037 -9.72105 -8.62509 -8.36439 -6.41996 -0.18551 0.49983 1.28749 1.36789 1.46120 1.87894 2.27441 2.46515 2.83943 2.85298 3.00098 3.35351 3.74326 3.91168 4.13377 4.25566 4.33076 4.34639 4.47050 4.60383 4.81478 4.91908 4.96626 5.03418 5.13791 5.19310 5.25242 5.28555 5.42254 5.53738 5.64044 5.80516 6.14617 6.49197 6.60001 6.83885 6.98305 7.21706 7.48251 8.78710 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.005105 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.884259 B = 5483.820238 C = 6071.416626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.027 0.973 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.257 1.257 13 N -0.694 5.694 14 C 0.561 3.439 15 O -0.581 6.581 16 C -0.254 4.254 17 C -0.004 4.004 18 C -0.224 4.224 19 C 0.168 3.832 20 F -0.137 7.137 21 C -0.251 4.251 22 C 0.297 3.703 23 N -0.847 5.847 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.269 0.731 30 H 0.404 0.596 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.414 0.586 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 4.509 -11.243 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.045 0.955 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.182 1.182 13 N -0.342 5.342 14 C 0.351 3.649 15 O -0.465 6.465 16 C -0.262 4.262 17 C -0.023 4.023 18 C -0.245 4.245 19 C 0.148 3.852 20 F -0.116 7.116 21 C -0.275 4.275 22 C 0.182 3.818 23 N -0.393 5.393 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.256 0.744 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.601 4.406 -10.434 18.479 hybrid contribution 0.137 -0.267 0.564 0.639 sum -14.464 4.139 -9.870 17.993 Atomic orbital electron populations 1.21758 0.95067 1.00511 1.01728 1.22208 0.96018 0.98442 1.00980 1.18814 0.93211 0.89675 0.83742 0.95497 1.21298 0.90395 1.38515 1.06964 0.92539 1.25543 0.95702 0.95875 0.99866 1.69980 1.10328 1.46187 1.30837 0.86030 0.79413 0.79905 0.78236 1.18686 1.22297 1.18154 1.45855 1.15491 1.55735 1.17121 1.18304 0.81679 0.77699 0.87182 1.90338 1.51636 1.62775 1.41710 1.19454 0.95665 1.14161 0.96960 1.21127 0.98730 0.92107 0.90383 1.20956 0.95800 1.07151 1.00569 1.17677 0.93580 0.92691 0.81299 1.91501 1.92609 1.80671 1.46774 1.20578 1.02217 1.11235 0.93425 1.17487 0.87912 0.88151 0.88225 1.43482 1.10436 1.69512 1.15875 0.92712 0.93981 0.92532 0.93798 0.91508 0.92136 0.75921 0.83408 0.82484 0.82429 0.74362 0.76400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.51 71.98 0.61 -4.30 16 2 C -0.14 -5.77 5.11 30.59 0.16 -5.62 16 3 C 0.25 11.43 1.83 44.24 0.08 11.51 16 4 H 0.03 1.37 6.63 -2.39 -0.02 1.36 16 5 C -0.53 -28.48 9.31 25.60 0.24 -28.24 16 6 H 0.06 3.21 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.66 5.45 84.65 0.46 2.12 16 8 N -0.93 -55.51 13.96 21.45 0.30 -55.22 16 9 Si 0.94 43.99 24.41 68.60 1.67 45.66 16 10 H -0.26 -11.56 6.83 99.48 0.68 -10.89 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.26 -11.84 6.53 99.48 0.65 -11.19 16 13 N -0.69 -26.27 4.97 -449.48 -2.23 -28.50 16 14 C 0.56 19.93 6.31 86.63 0.55 20.47 16 15 O -0.58 -22.67 10.77 -4.09 -0.04 -22.71 16 16 C -0.25 -7.28 5.89 -19.98 -0.12 -7.40 16 17 C 0.00 -0.10 9.51 22.51 0.21 0.11 16 18 C -0.22 -4.65 10.00 22.29 0.22 -4.42 16 19 C 0.17 3.60 7.30 22.43 0.16 3.77 16 20 F -0.14 -2.89 17.26 44.97 0.78 -2.12 16 21 C -0.25 -5.28 9.86 22.41 0.22 -5.06 16 22 C 0.30 7.50 6.76 38.70 0.26 7.76 16 23 N -0.85 -19.71 8.93 -50.97 -0.46 -20.17 16 24 H 0.05 1.98 5.64 -2.39 -0.01 1.97 16 25 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 28 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.40 13.57 6.60 -92.71 -0.61 12.96 16 31 H 0.15 3.11 6.44 -2.91 -0.02 3.09 16 32 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.41 11.70 5.34 -94.78 -0.51 11.20 16 35 H 0.41 6.59 8.84 -92.71 -0.82 5.77 16 Total: -1.00 -63.00 285.85 2.22 -60.78 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.86 Total: 31.56 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.06 Total: -9.29 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -2.39 Total: -103.89 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.04 Total: -22.71 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -63.00 2.22 -60.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062823499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.031 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds