Wall clock time and date at job start Mon Mar 30 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 H 1.08998 * 109.46844 * 304.99906 * 3 2 1 5 5 C 1.50711 * 109.47161 * 185.00012 * 3 2 1 6 6 H 1.07994 * 119.99633 * 240.00067 * 5 3 2 7 7 C 1.37877 * 119.99634 * 59.99699 * 5 3 2 8 8 N 1.31519 * 120.00510 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99663 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47325 * 60.00461 * 9 7 5 11 11 H 1.48507 * 109.47199 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47573 * 300.00281 * 9 7 5 13 13 N 1.46499 * 109.47424 * 65.00177 * 3 2 1 14 14 C 1.34779 * 119.99710 * 275.00149 * 13 3 2 15 15 O 1.21611 * 120.00094 * 359.97438 * 14 13 3 16 16 C 1.47320 * 119.99692 * 179.97438 * 14 13 3 17 17 C 1.39797 * 120.18234 * 354.07515 * 16 14 13 18 18 C 1.37635 * 119.95308 * 180.27435 * 17 16 14 19 19 C 1.38915 * 120.32028 * 359.49491 * 18 17 16 20 20 F 1.35093 * 119.81349 * 180.27855 * 19 18 17 21 21 C 1.38243 * 120.36706 * 0.50523 * 19 18 17 22 22 C 1.38826 * 120.04287 * 359.75387 * 21 19 18 23 23 N 1.38880 * 120.16343 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.47072 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46615 * 300.00005 * 1 2 3 26 26 H 1.08996 * 109.47019 * 59.99947 * 1 2 3 27 27 H 1.09001 * 109.47263 * 239.99619 * 2 1 3 28 28 H 1.09008 * 109.47420 * 119.99973 * 2 1 3 29 29 H 0.96998 * 120.00135 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99672 * 94.99719 * 13 3 2 31 31 H 1.08005 * 120.02497 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.83945 * 179.72307 * 18 17 16 33 33 H 1.08004 * 119.97595 * 179.76761 * 21 19 18 34 34 H 0.97000 * 119.99788 * 185.48488 * 23 22 21 35 35 H 0.97002 * 119.99528 * 5.48628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1734 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2349 11 1 6.3978 0.2176 -2.6510 12 1 6.4995 2.2814 -1.3822 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6645 1.3669 15 8 -0.3413 2.6326 0.4316 16 6 0.0453 3.3227 2.6259 17 6 0.8830 3.2550 3.7431 18 6 0.5115 3.8669 4.9187 19 6 -0.6888 4.5617 4.9988 20 9 -1.0407 5.1632 6.1561 21 6 -1.5272 4.6371 3.9022 22 6 -1.1699 4.0211 2.7105 23 7 -2.0101 4.0957 1.6071 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0605 -2.9503 30 1 2.2720 2.1231 1.9977 31 1 1.8188 2.7188 3.6852 32 1 1.1579 3.8096 5.7819 33 1 -2.4606 5.1759 3.9726 34 1 -1.7976 3.5992 0.8014 35 1 -2.8093 4.6443 1.6424 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062823500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:31 Heat of formation + Delta-G solvation = -62.534868 kcal Electronic energy + Delta-G solvation = -20053.221847 eV Core-core repulsion = 16772.231714 eV Total energy + Delta-G solvation = -3280.990133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.95073 -40.01200 -37.94117 -35.34128 -34.23869 -32.45267 -31.36832 -30.13612 -28.74455 -26.89900 -23.72551 -23.03561 -22.23546 -20.54219 -19.47016 -17.97053 -17.59879 -17.13144 -15.97024 -15.63492 -15.54460 -15.10214 -14.97143 -14.57836 -14.52546 -14.00710 -13.32617 -12.92322 -12.81136 -12.64980 -12.59905 -11.95064 -11.53094 -11.29261 -11.26450 -11.01396 -10.84606 -10.55692 -10.35582 -10.21197 -9.66277 -9.13934 -9.07103 -8.81350 -8.53032 -7.95184 -7.51497 -6.15098 -4.24728 0.94121 1.52125 3.20891 3.24281 3.29773 3.30887 3.87979 4.04899 4.12194 4.35905 4.38170 4.74312 5.06538 5.16363 5.26974 5.36192 5.66126 5.93354 6.02912 6.19101 6.31288 6.36398 6.43021 6.62364 6.80205 7.01819 7.15311 7.28580 7.35660 7.53281 7.60113 7.69871 7.86385 8.02940 8.17203 8.60529 8.73706 9.07231 9.42627 10.90143 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.004907 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.821135 B = 5705.035440 C = 6340.106714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.559 3.441 15 O -0.559 6.559 16 C -0.228 4.228 17 C -0.007 4.007 18 C -0.229 4.229 19 C 0.165 3.835 20 F -0.141 7.141 21 C -0.257 4.257 22 C 0.302 3.698 23 N -0.849 5.849 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.423 0.577 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 5.815 11.068 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.344 5.344 14 C 0.347 3.653 15 O -0.441 6.441 16 C -0.236 4.236 17 C -0.027 4.027 18 C -0.250 4.250 19 C 0.145 3.855 20 F -0.119 7.119 21 C -0.281 4.281 22 C 0.188 3.812 23 N -0.396 5.396 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.268 0.732 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.523 5.627 10.128 13.814 hybrid contribution 0.972 0.163 0.304 1.031 sum -6.552 5.790 10.432 13.611 Atomic orbital electron populations 1.21840 0.98362 0.98088 1.01184 1.21940 0.92628 0.99729 1.02366 1.18832 0.94299 0.89211 0.80814 0.93125 1.21186 0.90646 1.39210 1.06392 0.92109 1.24871 0.98614 0.94729 0.95345 1.69879 1.35251 1.37494 1.09309 0.86516 0.84822 0.78334 0.77473 1.20133 1.21136 1.20180 1.46389 1.14181 1.55215 1.18631 1.17841 0.82821 0.78494 0.86177 1.90339 1.51198 1.61889 1.40712 1.19713 0.97004 1.10227 0.96662 1.20979 0.97516 0.93602 0.90572 1.20709 0.97893 1.06226 1.00209 1.17528 0.93832 0.93088 0.81071 1.91480 1.92069 1.81212 1.47170 1.20399 1.03321 1.11997 0.92384 1.17384 0.88003 0.88875 0.86891 1.43574 1.26118 1.53427 1.16479 0.95863 0.94246 0.93143 0.88228 0.94982 0.92486 0.77756 0.84595 0.84849 0.84823 0.73225 0.78257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.53 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -13.97 4.97 -56.04 -0.28 -14.24 16 14 C 0.56 10.73 6.31 -12.57 -0.08 10.66 16 15 O -0.56 -11.84 10.77 5.27 0.06 -11.78 16 16 C -0.23 -3.60 5.89 -104.80 -0.62 -4.22 16 17 C -0.01 -0.10 9.51 -39.22 -0.37 -0.47 16 18 C -0.23 -2.79 10.00 -39.55 -0.40 -3.18 16 19 C 0.17 2.09 7.30 -39.33 -0.29 1.81 16 20 F -0.14 -1.75 17.26 2.25 0.04 -1.72 16 21 C -0.26 -3.23 9.85 -39.36 -0.39 -3.61 16 22 C 0.30 4.36 6.76 -83.63 -0.57 3.79 16 23 N -0.85 -11.37 8.93 32.54 0.29 -11.08 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 28 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.78 6.60 -40.82 -0.27 6.51 16 31 H 0.14 1.57 6.44 -52.48 -0.34 1.23 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.42 6.66 5.34 -40.96 -0.22 6.45 16 35 H 0.39 3.89 8.84 -40.82 -0.36 3.53 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -28.25 292.62 -6.78 -35.04 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -3.82 Total: 14.73 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.08 Total: -7.02 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.64 Total: -48.85 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.78 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.25 -6.78 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062823500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds