Wall clock time and date at job start Mon Mar 30 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47500 * 2 1 4 4 H 1.09005 * 109.47239 * 54.99983 * 3 2 1 5 5 C 1.50698 * 109.47622 * 174.99981 * 3 2 1 6 6 H 1.08001 * 120.00092 * 119.99408 * 5 3 2 7 7 C 1.37884 * 119.99851 * 300.00615 * 5 3 2 8 8 N 1.31509 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99751 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47272 * 89.99644 * 9 7 5 11 11 H 1.48498 * 109.46802 * 209.99492 * 9 7 5 12 12 H 1.48499 * 109.47326 * 329.99521 * 9 7 5 13 13 N 1.46500 * 109.47264 * 295.00258 * 3 2 1 14 14 C 1.34780 * 120.00045 * 84.99391 * 13 3 2 15 15 O 1.21592 * 120.00202 * 0.02562 * 14 13 3 16 16 C 1.47522 * 119.99807 * 180.02562 * 14 13 3 17 17 C 1.39778 * 120.06465 * 0.02562 * 16 14 13 18 18 C 1.37645 * 119.96955 * 179.97438 * 17 16 14 19 19 C 1.39144 * 120.09483 * 359.72047 * 18 17 16 20 20 N 1.39201 * 119.93384 * 180.30120 * 19 18 17 21 21 C 1.39382 * 120.12631 * 0.55412 * 19 18 17 22 22 F 1.35104 * 119.98325 * 179.72089 * 21 19 18 23 23 C 1.37783 * 120.02906 * 359.44938 * 21 19 18 24 24 H 1.09001 * 109.47041 * 299.99809 * 1 2 3 25 25 H 1.08998 * 109.46813 * 60.00022 * 1 2 3 26 26 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46735 * 239.99479 * 2 1 3 28 28 H 1.09004 * 109.47206 * 120.00158 * 2 1 3 29 29 H 0.97002 * 119.99948 * 180.02562 * 8 7 5 30 30 H 0.97002 * 119.99735 * 265.00250 * 13 3 2 31 31 H 1.07998 * 120.01203 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.95649 * 180.02562 * 18 17 16 33 33 H 0.97003 * 119.99691 * 180.25946 * 20 19 18 34 34 H 0.96989 * 120.00348 * 0.25296 * 20 19 18 35 35 H 1.08002 * 120.04513 * 180.29652 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3372 2.1732 9 14 6.0050 0.8798 1.3811 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8393 0.0270 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4317 16 6 0.0448 3.3235 -2.6276 17 6 0.9360 3.3604 -3.7038 18 6 0.5695 3.9754 -4.8793 19 6 -0.6894 4.5556 -5.0002 20 7 -1.0589 5.1712 -6.1928 21 6 -1.5792 4.5261 -3.9278 22 9 -2.7987 5.0953 -4.0464 23 6 -1.2177 3.9119 -2.7486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8293 -0.0607 2.9502 30 1 2.2720 2.1230 -1.9978 31 1 1.9118 2.9065 -3.6128 32 1 1.2582 4.0034 -5.7108 33 1 -1.9349 5.5793 -6.2768 34 1 -0.4405 5.1923 -6.9396 35 1 -1.9087 3.8848 -1.9190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063011067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:53 Heat of formation + Delta-G solvation = -65.188024 kcal Electronic energy + Delta-G solvation = -19815.501464 eV Core-core repulsion = 16534.396282 eV Total energy + Delta-G solvation = -3281.105182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.81308 -39.73552 -38.19763 -35.13845 -34.55772 -32.41117 -31.05612 -30.48628 -28.84994 -26.81312 -23.64372 -22.80775 -22.65891 -20.41915 -19.34928 -18.20686 -17.46243 -17.09905 -16.35880 -15.64618 -15.37695 -15.35657 -15.04535 -14.42851 -14.38556 -13.88593 -13.39585 -12.98571 -12.83081 -12.68810 -12.25192 -12.03012 -11.53916 -11.28621 -11.20629 -10.95294 -10.84695 -10.64899 -10.30106 -10.14410 -9.59158 -9.07223 -9.00999 -8.91260 -8.47738 -7.87607 -7.61415 -6.10664 -4.20042 1.06019 1.22152 3.23411 3.25707 3.32468 3.33892 3.51092 4.00122 4.18641 4.26070 4.40616 4.70856 5.09286 5.20608 5.28045 5.32758 5.57869 5.89325 6.01044 6.20536 6.40678 6.43562 6.50833 6.64476 6.70669 7.08633 7.14539 7.24407 7.38540 7.40333 7.48248 7.64533 7.76617 7.92980 8.20487 8.69374 8.79894 9.16021 9.47352 10.94696 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.004522 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.946893 B = 6191.066620 C = 6789.800731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.547 3.453 15 O -0.548 6.548 16 C -0.154 4.154 17 C -0.045 4.045 18 C -0.184 4.184 19 C 0.204 3.796 20 N -0.869 5.869 21 C 0.004 3.996 22 F -0.145 7.145 23 C -0.048 4.048 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.402 0.598 34 H 0.402 0.598 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 6.723 -15.741 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.333 3.667 15 O -0.428 6.428 16 C -0.159 4.159 17 C -0.065 4.065 18 C -0.207 4.207 19 C 0.097 3.903 20 N -0.408 5.408 21 C -0.020 4.020 22 F -0.124 7.124 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.055 6.578 -14.826 17.313 hybrid contribution 0.989 0.252 -0.657 1.214 sum -5.066 6.830 -15.483 17.665 Atomic orbital electron populations 1.21848 0.98331 0.98042 1.01328 1.21932 0.92652 0.99747 1.02272 1.18811 0.94205 0.89220 0.80941 0.93158 1.21228 0.90695 1.39025 1.06323 0.92093 1.24879 0.98552 0.94800 0.95399 1.69894 1.35112 1.37596 1.09295 0.86463 0.84918 0.77627 0.78167 1.20589 1.21105 1.19868 1.46422 1.14360 1.55679 1.18546 1.17937 0.82954 0.79191 0.86632 1.90746 1.51581 1.60386 1.40058 1.19902 0.95020 1.05006 0.96020 1.21207 0.98898 0.94979 0.91403 1.20391 0.94999 1.05483 0.99807 1.17872 0.93181 0.93107 0.86110 1.42259 1.20967 1.64515 1.13080 1.16942 0.82477 1.07067 0.95497 1.91433 1.41016 1.83466 1.96456 1.21036 0.96473 0.93495 0.95856 0.93126 0.94185 0.95879 0.95023 0.88283 0.92570 0.77987 0.84698 0.84862 0.76956 0.76866 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.75 2.24 -69.09 -0.15 6.60 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -14.49 4.97 -55.98 -0.28 -14.77 16 14 C 0.55 11.07 6.33 -12.47 -0.08 10.99 16 15 O -0.55 -12.94 13.47 5.28 0.07 -12.87 16 16 C -0.15 -2.47 5.88 -104.95 -0.62 -3.09 16 17 C -0.05 -0.58 9.53 -39.22 -0.37 -0.95 16 18 C -0.18 -1.95 9.87 -39.46 -0.39 -2.34 16 19 C 0.20 2.27 6.76 -83.75 -0.57 1.70 16 20 N -0.87 -6.66 9.06 32.46 0.29 -6.37 16 21 C 0.00 0.05 7.30 -39.32 -0.29 -0.23 16 22 F -0.14 -1.91 16.62 2.25 0.04 -1.88 16 23 C -0.05 -0.74 9.56 -39.16 -0.37 -1.11 16 24 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 25 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 6.83 6.56 -40.82 -0.27 6.56 16 31 H 0.14 1.51 6.39 -52.49 -0.34 1.17 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.40 2.77 8.29 -40.82 -0.34 2.43 16 34 H 0.40 2.05 8.83 -40.82 -0.36 1.69 16 35 H 0.15 2.32 7.64 -52.49 -0.40 1.92 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -30.55 296.83 -6.78 -37.33 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.92 Total: 9.66 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.07 Total: -7.03 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.64 Total: -45.06 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.55 -6.78 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063011067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.859 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds