Wall clock time and date at job start Mon Mar 30 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47500 * 2 1 4 4 H 1.09005 * 109.47239 * 54.99983 * 3 2 1 5 5 C 1.50698 * 109.47622 * 174.99981 * 3 2 1 6 6 H 1.08001 * 120.00092 * 119.99408 * 5 3 2 7 7 C 1.37884 * 119.99851 * 300.00615 * 5 3 2 8 8 N 1.31509 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99751 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47272 * 89.99644 * 9 7 5 11 11 H 1.48498 * 109.46802 * 209.99492 * 9 7 5 12 12 H 1.48499 * 109.47326 * 329.99521 * 9 7 5 13 13 N 1.46500 * 109.47264 * 295.00258 * 3 2 1 14 14 C 1.34780 * 120.00045 * 84.99391 * 13 3 2 15 15 O 1.21592 * 120.00202 * 0.02562 * 14 13 3 16 16 C 1.47522 * 119.99807 * 180.02562 * 14 13 3 17 17 C 1.39778 * 120.06465 * 0.02562 * 16 14 13 18 18 C 1.37645 * 119.96955 * 179.97438 * 17 16 14 19 19 C 1.39144 * 120.09483 * 359.72047 * 18 17 16 20 20 N 1.39201 * 119.93384 * 180.30120 * 19 18 17 21 21 C 1.39382 * 120.12631 * 0.55412 * 19 18 17 22 22 F 1.35104 * 119.98325 * 179.72089 * 21 19 18 23 23 C 1.37783 * 120.02906 * 359.44938 * 21 19 18 24 24 H 1.09001 * 109.47041 * 299.99809 * 1 2 3 25 25 H 1.08998 * 109.46813 * 60.00022 * 1 2 3 26 26 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46735 * 239.99479 * 2 1 3 28 28 H 1.09004 * 109.47206 * 120.00158 * 2 1 3 29 29 H 0.97002 * 119.99948 * 180.02562 * 8 7 5 30 30 H 0.97002 * 119.99735 * 265.00250 * 13 3 2 31 31 H 1.07998 * 120.01203 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.95649 * 180.02562 * 18 17 16 33 33 H 0.97003 * 119.99691 * 180.25946 * 20 19 18 34 34 H 0.96989 * 120.00348 * 0.25296 * 20 19 18 35 35 H 1.08002 * 120.04513 * 180.29652 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3372 2.1732 9 14 6.0050 0.8798 1.3811 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8393 0.0270 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4317 16 6 0.0448 3.3235 -2.6276 17 6 0.9360 3.3604 -3.7038 18 6 0.5695 3.9754 -4.8793 19 6 -0.6894 4.5556 -5.0002 20 7 -1.0589 5.1712 -6.1928 21 6 -1.5792 4.5261 -3.9278 22 9 -2.7987 5.0953 -4.0464 23 6 -1.2177 3.9119 -2.7486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8293 -0.0607 2.9502 30 1 2.2720 2.1230 -1.9978 31 1 1.9118 2.9065 -3.6128 32 1 1.2582 4.0034 -5.7108 33 1 -1.9349 5.5793 -6.2768 34 1 -0.4405 5.1923 -6.9396 35 1 -1.9087 3.8848 -1.9190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063011067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:52 Heat of formation + Delta-G solvation = -86.457161 kcal Electronic energy + Delta-G solvation = -19816.423763 eV Core-core repulsion = 16534.396282 eV Total energy + Delta-G solvation = -3282.027481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83678 -41.09138 -39.48460 -36.91955 -35.59878 -34.28116 -32.84572 -31.55289 -30.07193 -28.63390 -25.26386 -24.20083 -23.81329 -22.01994 -21.10689 -19.60041 -18.41731 -18.23850 -17.80221 -17.14701 -16.72410 -16.66681 -16.19245 -16.14688 -15.95472 -14.95735 -14.83925 -14.57433 -14.15968 -14.01036 -13.62753 -13.42976 -13.32792 -13.13107 -12.84510 -12.66375 -12.33721 -12.13023 -12.02887 -11.71622 -11.53020 -11.02204 -10.72794 -10.48879 -9.92209 -9.62683 -8.57659 -8.12449 -6.29859 -0.03592 0.21750 1.48181 1.48549 1.59153 1.99034 2.38125 2.63145 2.76826 2.88174 3.17350 3.25900 3.73453 3.97823 4.14449 4.26098 4.51746 4.59792 4.61419 4.77215 4.87856 5.07340 5.08464 5.15896 5.28570 5.37514 5.47210 5.59415 5.64695 5.68710 5.83322 5.97861 6.19974 6.33494 6.78058 6.82361 7.03386 7.37023 7.61524 8.93125 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030696 B = 0.004522 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.946893 B = 6191.066620 C = 6789.800731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.698 5.698 14 C 0.544 3.456 15 O -0.594 6.594 16 C -0.184 4.184 17 C -0.035 4.035 18 C -0.173 4.173 19 C 0.224 3.776 20 N -0.848 5.848 21 C -0.012 4.012 22 F -0.147 7.147 23 C -0.059 4.059 24 H 0.024 0.976 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.409 0.591 34 H 0.420 0.580 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 7.391 -19.311 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.182 1.182 13 N -0.347 5.347 14 C 0.333 3.667 15 O -0.477 6.477 16 C -0.189 4.189 17 C -0.055 4.055 18 C -0.195 4.195 19 C 0.113 3.887 20 N -0.387 5.387 21 C -0.036 4.036 22 F -0.126 7.126 23 C -0.080 4.080 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.170 0.830 32 H 0.194 0.806 33 H 0.238 0.762 34 H 0.252 0.748 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.585 7.278 -18.489 20.392 hybrid contribution 0.436 0.143 0.331 0.565 sum -4.149 7.421 -18.158 20.050 Atomic orbital electron populations 1.21687 0.97229 0.99077 1.00186 1.21782 0.93546 0.99171 1.01417 1.18401 0.93808 0.89163 0.81253 0.98494 1.21584 0.91240 1.38874 1.06808 0.90734 1.25779 1.03329 0.94362 0.95014 1.70057 1.37103 1.38426 1.09853 0.85361 0.79085 0.77284 0.78696 1.20583 1.21136 1.18157 1.46126 1.15152 1.55781 1.17657 1.18579 0.82020 0.78349 0.87703 1.90714 1.52749 1.62036 1.42165 1.19483 0.96484 1.07715 0.95233 1.21385 0.98741 0.94424 0.90933 1.20762 0.95109 1.03685 0.99962 1.17973 0.92704 0.91743 0.86244 1.42315 1.21638 1.62520 1.12243 1.16944 0.83047 1.07824 0.95752 1.91424 1.41224 1.83498 1.96435 1.20904 0.96187 0.94502 0.96361 0.95680 0.93916 0.93560 0.93805 0.90927 0.92661 0.76061 0.83012 0.80642 0.76174 0.74794 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.36 2.24 44.24 0.10 14.45 16 4 H 0.00 -0.18 7.58 -2.38 -0.02 -0.19 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 13 N -0.70 -29.23 4.97 -449.29 -2.23 -31.47 16 14 C 0.54 22.81 6.33 86.69 0.55 23.36 16 15 O -0.59 -29.87 13.47 -4.01 -0.05 -29.93 16 16 C -0.18 -5.88 5.88 -20.08 -0.12 -6.00 16 17 C -0.04 -0.81 9.53 22.50 0.21 -0.59 16 18 C -0.17 -2.90 9.87 22.35 0.22 -2.68 16 19 C 0.22 4.17 6.76 38.47 0.26 4.43 16 20 N -0.85 -9.22 9.06 -51.23 -0.46 -9.68 16 21 C -0.01 -0.30 7.30 22.44 0.16 -0.13 16 22 F -0.15 -3.73 16.62 44.97 0.75 -2.98 16 23 C -0.06 -1.84 9.56 22.54 0.22 -1.62 16 24 H 0.02 1.25 7.84 -2.39 -0.02 1.23 16 25 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.40 13.87 6.56 -92.71 -0.61 13.26 16 31 H 0.15 2.89 6.39 -2.91 -0.02 2.87 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.41 4.02 8.29 -92.71 -0.77 3.25 16 34 H 0.42 2.02 8.83 -92.72 -0.82 1.20 16 35 H 0.13 4.31 7.64 -2.91 -0.02 4.29 16 Total: -1.00 -69.83 296.83 2.28 -67.55 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -1.04 Total: 22.14 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 3.05 Total: -7.03 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -2.46 Total: -93.43 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.83 2.28 -67.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063011067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.907 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds