Wall clock time and date at job start Mon Mar 30 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21595 * 120.00104 * 0.02562 * 14 13 3 16 16 C 1.47527 * 119.99647 * 179.97438 * 14 13 3 17 17 C 1.39766 * 120.06344 * 359.72961 * 16 14 13 18 18 C 1.37653 * 119.96639 * 179.69239 * 17 16 14 19 19 C 1.39136 * 120.09686 * 0.60087 * 18 17 16 20 20 N 1.39202 * 119.93960 * 179.69536 * 19 18 17 21 21 C 1.39379 * 120.12696 * 359.67462 * 19 18 17 22 22 F 1.35104 * 119.98868 * 180.02562 * 21 19 18 23 23 C 1.37794 * 120.03070 * 0.02562 * 21 19 18 24 24 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 25 25 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 28 28 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 29 29 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 30 30 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 31 31 H 1.08005 * 120.02016 * 359.97051 * 17 16 14 32 32 H 1.08007 * 119.95196 * 180.29620 * 18 17 16 33 33 H 0.97001 * 120.00028 * 179.97438 * 20 19 18 34 34 H 0.97000 * 119.99725 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.04962 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3387 2.6307 0.4507 16 6 0.0623 3.3173 2.6454 17 6 0.9588 3.3471 3.7173 18 6 0.6027 3.9654 4.8944 19 6 -0.6533 4.5500 5.0233 20 7 -1.0124 5.1689 6.2174 21 6 -1.5526 4.5176 3.9589 22 9 -2.7713 5.0866 4.0869 23 6 -1.1993 3.9054 2.7760 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.9924 1.1426 -0.6139 30 1 2.2853 2.1184 1.9978 31 1 1.9322 2.8892 3.6205 32 1 1.2974 3.9925 5.7209 33 1 -1.8877 5.5770 6.3081 34 1 -0.3873 5.1919 6.9587 35 1 -1.8957 3.8805 1.9510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063011068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:56 Heat of formation + Delta-G solvation = -65.225955 kcal Electronic energy + Delta-G solvation = -19897.498478 eV Core-core repulsion = 16616.391651 eV Total energy + Delta-G solvation = -3281.106827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.88020 -39.87167 -38.35641 -35.36448 -34.66032 -32.47051 -31.57107 -30.59214 -28.97563 -27.06105 -23.53785 -22.89152 -22.25684 -20.71049 -19.57703 -18.42316 -17.59971 -17.39350 -16.89489 -15.72912 -15.69563 -15.50539 -15.17596 -14.71138 -14.00941 -13.92694 -13.40018 -13.07889 -12.94665 -12.65500 -12.49198 -12.31375 -12.19041 -11.80529 -11.37073 -10.92688 -10.75484 -10.67653 -10.44337 -9.78931 -9.68596 -9.25361 -8.98842 -8.87900 -8.50797 -8.11390 -7.73052 -6.55124 -4.22864 0.96875 1.14517 3.12187 3.37479 3.44794 3.47301 3.61186 3.87321 4.04716 4.19378 4.42199 4.63288 5.01462 5.15574 5.20761 5.21819 5.50022 5.81158 5.93481 6.05602 6.09058 6.09889 6.26743 6.31553 6.56663 6.72314 6.77883 6.92578 7.04660 7.07659 7.32698 7.36084 7.39893 7.65248 8.23135 8.48048 8.70625 8.98987 9.47592 10.85508 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.004702 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.899900 B = 5953.340092 C = 6427.139287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.050 0.950 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.905 5.905 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.288 1.288 13 N -0.696 5.696 14 C 0.549 3.451 15 O -0.549 6.549 16 C -0.157 4.157 17 C -0.044 4.044 18 C -0.184 4.184 19 C 0.206 3.794 20 N -0.868 5.868 21 C 0.004 3.996 22 F -0.144 7.144 23 C -0.047 4.047 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.268 0.732 30 H 0.391 0.609 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.402 0.598 34 H 0.403 0.597 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.928 6.176 14.701 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.539 5.539 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.343 5.343 14 C 0.335 3.665 15 O -0.429 6.429 16 C -0.162 4.162 17 C -0.064 4.064 18 C -0.207 4.207 19 C 0.099 3.901 20 N -0.407 5.407 21 C -0.020 4.020 22 F -0.123 7.123 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.225 0.775 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.231 0.769 34 H 0.232 0.768 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.411 5.503 12.460 17.769 hybrid contribution 0.067 0.915 2.432 2.599 sum -11.345 6.418 14.892 19.791 Atomic orbital electron populations 1.21904 0.97122 0.99002 1.02274 1.22248 0.94068 0.99840 1.01361 1.19271 0.95904 0.88569 0.82516 0.93215 1.22165 0.89697 1.48113 1.04792 0.92007 1.25689 0.97475 0.93558 1.00205 1.70839 1.04429 1.42551 1.36049 0.83956 0.75374 0.77218 0.75791 1.20686 1.19790 1.21419 1.46163 1.14396 1.55708 1.18082 1.17988 0.82776 0.78997 0.86744 1.90739 1.51190 1.60419 1.40578 1.19807 0.95149 1.05439 0.95823 1.21205 0.98805 0.94923 0.91421 1.20400 0.95126 1.05294 0.99831 1.17880 0.93146 0.92892 0.86138 1.42277 1.20863 1.64249 1.13319 1.16932 0.82444 1.07071 0.95526 1.91437 1.41045 1.83458 1.96359 1.21024 0.96437 0.93487 0.95777 0.92847 0.94975 0.93025 0.92220 0.92719 0.92168 0.77493 0.84727 0.84771 0.76898 0.76797 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.52 37.15 0.32 -2.63 16 2 C -0.14 -3.03 5.20 -26.74 -0.14 -3.17 16 3 C 0.24 5.73 1.81 -69.08 -0.13 5.60 16 4 H 0.05 1.31 6.07 -51.93 -0.32 0.99 16 5 C -0.61 -16.34 9.09 -34.44 -0.31 -16.65 16 6 H 0.06 1.72 7.95 -52.48 -0.42 1.30 16 7 C 0.04 1.02 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -26.95 13.70 55.43 0.76 -26.19 16 9 Si 1.05 25.41 25.39 -169.99 -4.32 21.09 16 10 H -0.28 -6.43 6.73 56.52 0.38 -6.05 16 11 H -0.27 -6.41 6.38 56.52 0.36 -6.05 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.70 -13.96 4.97 -55.98 -0.28 -14.24 16 14 C 0.55 10.63 6.35 -12.47 -0.08 10.55 16 15 O -0.55 -12.24 13.47 5.28 0.07 -12.17 16 16 C -0.16 -2.43 5.88 -104.95 -0.62 -3.04 16 17 C -0.04 -0.55 9.53 -39.22 -0.37 -0.92 16 18 C -0.18 -1.90 9.87 -39.46 -0.39 -2.29 16 19 C 0.21 2.22 6.76 -83.76 -0.57 1.65 16 20 N -0.87 -6.38 9.06 32.45 0.29 -6.09 16 21 C 0.00 0.05 7.30 -39.32 -0.29 -0.24 16 22 F -0.14 -1.84 16.62 2.25 0.04 -1.80 16 23 C -0.05 -0.69 9.56 -39.16 -0.37 -1.06 16 24 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.04 5.63 -51.93 -0.29 0.75 16 27 H 0.06 1.37 4.43 -51.93 -0.23 1.14 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.27 7.88 8.72 -40.82 -0.36 7.53 16 30 H 0.39 6.89 6.54 -40.82 -0.27 6.62 16 31 H 0.13 1.50 6.39 -52.48 -0.34 1.16 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.40 2.64 8.29 -40.82 -0.34 2.30 16 34 H 0.40 1.95 8.83 -40.82 -0.36 1.59 16 35 H 0.15 2.21 7.64 -52.49 -0.40 1.81 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -31.62 291.42 -5.93 -37.55 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.85 Total: 8.72 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.04 Total: -11.27 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.77 Total: -46.52 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.32 Total: 21.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.62 -5.93 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063011068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.676 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds