Wall clock time and date at job start Mon Mar 30 2020 05:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21595 * 120.00104 * 0.02562 * 14 13 3 16 16 C 1.47527 * 119.99647 * 179.97438 * 14 13 3 17 17 C 1.39766 * 120.06344 * 359.72961 * 16 14 13 18 18 C 1.37653 * 119.96639 * 179.69239 * 17 16 14 19 19 C 1.39136 * 120.09686 * 0.60087 * 18 17 16 20 20 N 1.39202 * 119.93960 * 179.69536 * 19 18 17 21 21 C 1.39379 * 120.12696 * 359.67462 * 19 18 17 22 22 F 1.35104 * 119.98868 * 180.02562 * 21 19 18 23 23 C 1.37794 * 120.03070 * 0.02562 * 21 19 18 24 24 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 25 25 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 28 28 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 29 29 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 30 30 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 31 31 H 1.08005 * 120.02016 * 359.97051 * 17 16 14 32 32 H 1.08007 * 119.95196 * 180.29620 * 18 17 16 33 33 H 0.97001 * 120.00028 * 179.97438 * 20 19 18 34 34 H 0.97000 * 119.99725 * 359.97438 * 20 19 18 35 35 H 1.07996 * 120.04962 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3387 2.6307 0.4507 16 6 0.0623 3.3173 2.6454 17 6 0.9588 3.3471 3.7173 18 6 0.6027 3.9654 4.8944 19 6 -0.6533 4.5500 5.0233 20 7 -1.0124 5.1689 6.2174 21 6 -1.5526 4.5176 3.9589 22 9 -2.7713 5.0866 4.0869 23 6 -1.1993 3.9054 2.7760 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.9924 1.1426 -0.6139 30 1 2.2853 2.1184 1.9978 31 1 1.9322 2.8892 3.6205 32 1 1.2974 3.9925 5.7209 33 1 -1.8877 5.5770 6.3081 34 1 -0.3873 5.1919 6.9587 35 1 -1.8957 3.8805 1.9510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063011068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:55 Heat of formation + Delta-G solvation = -88.341770 kcal Electronic energy + Delta-G solvation = -19898.500855 eV Core-core repulsion = 16616.391651 eV Total energy + Delta-G solvation = -3282.109204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.86116 -41.18972 -39.57029 -37.08456 -35.64381 -34.46124 -33.22976 -31.59844 -30.14503 -28.82021 -24.84958 -24.04899 -23.85376 -22.21781 -21.23354 -20.07039 -18.91117 -18.43192 -17.96161 -17.22787 -16.86003 -16.71651 -16.31260 -16.07673 -15.63925 -15.04401 -14.87913 -14.51947 -14.38184 -14.20101 -14.11034 -13.78514 -13.54586 -13.35489 -12.71670 -12.49555 -12.35820 -12.27196 -11.76521 -11.68665 -11.46648 -10.97089 -10.78907 -10.63906 -9.96269 -9.81569 -8.77118 -8.61524 -6.44695 -0.08910 0.17769 1.42675 1.52467 1.70248 1.91381 2.40473 2.44344 2.72549 2.81744 3.05155 3.21673 3.68944 3.87545 4.08781 4.21871 4.31476 4.39415 4.52415 4.57541 4.80171 4.90354 5.02907 5.07915 5.09740 5.20269 5.28213 5.34592 5.55677 5.61499 5.67060 5.70334 6.02489 6.29912 6.53947 6.78562 6.87314 7.29421 7.46092 8.63414 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.004702 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.899900 B = 5953.340092 C = 6427.139287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.245 3.755 4 H 0.024 0.976 5 C -0.603 4.603 6 H 0.044 0.956 7 C -0.007 4.007 8 N -0.935 5.935 9 Si 1.077 2.923 10 H -0.257 1.257 11 H -0.267 1.267 12 H -0.287 1.287 13 N -0.697 5.697 14 C 0.549 3.451 15 O -0.586 6.586 16 C -0.185 4.185 17 C -0.037 4.037 18 C -0.175 4.175 19 C 0.225 3.775 20 N -0.848 5.848 21 C -0.011 4.011 22 F -0.146 7.146 23 C -0.055 4.055 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.258 0.742 30 H 0.402 0.598 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.409 0.591 34 H 0.420 0.580 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 6.369 17.104 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.042 0.958 5 C -0.642 4.642 6 H 0.062 0.938 7 C -0.207 4.207 8 N -0.571 5.571 9 Si 0.901 3.099 10 H -0.182 1.182 11 H -0.193 1.193 12 H -0.213 1.213 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.468 6.468 16 C -0.191 4.191 17 C -0.057 4.057 18 C -0.197 4.197 19 C 0.114 3.886 20 N -0.387 5.387 21 C -0.035 4.035 22 F -0.125 7.125 23 C -0.075 4.075 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.238 0.762 31 H 0.164 0.836 32 H 0.191 0.809 33 H 0.239 0.761 34 H 0.252 0.748 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.323 5.720 14.948 20.200 hybrid contribution 0.310 0.992 1.887 2.154 sum -12.013 6.712 16.835 21.744 Atomic orbital electron populations 1.21783 0.95496 1.00523 1.01492 1.22152 0.95452 0.98281 1.01370 1.18945 0.93640 0.89812 0.83552 0.95790 1.22358 0.91385 1.46514 1.03904 0.93780 1.26762 0.97665 0.93641 1.02645 1.70934 1.05329 1.44789 1.36051 0.83577 0.74389 0.78539 0.73436 1.18189 1.19259 1.21341 1.45956 1.15291 1.56090 1.17238 1.18520 0.81769 0.78126 0.87774 1.90707 1.52068 1.61757 1.42300 1.19436 0.96546 1.08030 0.95078 1.21352 0.98577 0.94551 0.91197 1.20736 0.95338 1.03718 0.99928 1.17971 0.92640 0.91604 0.86357 1.42334 1.21544 1.62311 1.12482 1.16938 0.82973 1.07773 0.95768 1.91430 1.41204 1.83482 1.96337 1.20915 0.96081 0.94231 0.96300 0.94223 0.92179 0.93285 0.92941 0.91912 0.93235 0.76158 0.83567 0.80938 0.76089 0.74825 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.52 71.98 0.61 -4.74 16 2 C -0.13 -5.83 5.20 30.59 0.16 -5.67 16 3 C 0.25 11.73 1.81 44.24 0.08 11.81 16 4 H 0.02 1.29 6.07 -2.39 -0.01 1.27 16 5 C -0.60 -32.76 9.09 25.60 0.23 -32.52 16 6 H 0.04 2.49 7.95 -2.91 -0.02 2.47 16 7 C -0.01 -0.41 5.42 84.65 0.46 0.05 16 8 N -0.94 -56.62 13.70 21.45 0.29 -56.32 16 9 Si 1.08 51.28 25.39 68.60 1.74 53.02 16 10 H -0.26 -11.20 6.73 99.48 0.67 -10.53 16 11 H -0.27 -12.43 6.38 99.48 0.63 -11.80 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.70 -27.99 4.97 -449.27 -2.24 -30.23 16 14 C 0.55 21.47 6.35 86.69 0.55 22.02 16 15 O -0.59 -26.76 13.47 -4.02 -0.05 -26.82 16 16 C -0.19 -5.64 5.88 -20.08 -0.12 -5.76 16 17 C -0.04 -0.84 9.53 22.50 0.21 -0.63 16 18 C -0.17 -2.93 9.87 22.35 0.22 -2.71 16 19 C 0.22 4.06 6.76 38.46 0.26 4.32 16 20 N -0.85 -8.88 9.06 -51.24 -0.46 -9.34 16 21 C -0.01 -0.25 7.30 22.44 0.16 -0.09 16 22 F -0.15 -3.50 16.62 44.97 0.75 -2.75 16 23 C -0.05 -1.60 9.56 22.54 0.22 -1.38 16 24 H 0.04 1.65 7.87 -2.38 -0.02 1.63 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.94 5.63 -2.39 -0.01 1.93 16 27 H 0.05 2.35 4.43 -2.39 -0.01 2.34 16 28 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.26 15.60 8.72 -92.71 -0.81 14.79 16 30 H 0.40 14.01 6.54 -92.71 -0.61 13.41 16 31 H 0.15 2.91 6.39 -2.91 -0.02 2.89 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.41 3.79 8.29 -92.71 -0.77 3.03 16 34 H 0.42 1.97 8.83 -92.71 -0.82 1.16 16 35 H 0.13 4.12 7.64 -2.91 -0.02 4.10 16 Total: -1.00 -69.67 291.42 1.90 -67.77 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -1.18 Total: 19.98 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.05 Total: -15.30 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -2.41 Total: -95.90 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.75 Total: -2.75 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.74 Total: 53.02 kcal Total: -69.67 1.90 -67.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063011068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.573 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds