Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47333 * 2 1 4 4 C 1.50701 * 109.47308 * 120.00213 * 2 1 3 5 5 H 1.08005 * 119.99695 * 119.99753 * 4 2 1 6 6 C 1.37871 * 119.99972 * 300.00458 * 4 2 1 7 7 N 1.31514 * 120.00336 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47194 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46909 * 299.99993 * 8 6 4 11 11 H 1.48500 * 109.46862 * 59.99317 * 8 6 4 12 12 N 1.46503 * 109.47196 * 240.00086 * 2 1 3 13 13 C 1.46499 * 120.00205 * 300.00630 * 12 2 1 14 14 C 1.34780 * 119.99778 * 120.00118 * 12 2 1 15 15 O 1.21566 * 120.00210 * 355.61428 * 14 12 2 16 16 C 1.47710 * 119.99730 * 175.62054 * 14 12 2 17 17 C 1.39605 * 120.13160 * 47.96392 * 16 14 12 18 18 C 1.38517 * 119.79778 * 179.78969 * 17 16 14 19 19 N 1.39854 * 119.96801 * 180.22802 * 18 17 16 20 20 C 1.39064 * 120.06321 * 0.48679 * 18 17 16 21 21 C 1.38114 * 120.26699 * 359.74311 * 20 18 17 22 22 C 1.38328 * 120.20196 * 0.02562 * 21 20 18 23 23 F 1.35095 * 120.03537 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.46588 * 59.99578 * 1 2 3 25 25 H 1.08994 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47067 * 299.99922 * 1 2 3 27 27 H 0.96995 * 120.00823 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47135 * 94.80852 * 13 12 2 29 29 H 1.08997 * 109.46825 * 214.81161 * 13 12 2 30 30 H 1.08998 * 109.46738 * 334.80382 * 13 12 2 31 31 H 1.08004 * 120.10241 * 359.97438 * 17 16 14 32 32 H 0.96999 * 119.99643 * 180.25685 * 19 18 17 33 33 H 0.96996 * 119.99731 * 0.25603 * 19 18 17 34 34 H 1.07998 * 119.86583 * 179.72097 * 20 18 17 35 35 H 1.07999 * 119.90178 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 1.8269 -0.4202 5.2204 10 1 1.8259 -2.5204 4.0076 11 1 3.8064 -1.1211 4.0080 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0833 15 8 3.0214 1.1490 -1.9329 16 6 3.3652 -0.7570 -3.2384 17 6 2.5541 -1.5792 -4.0226 18 6 3.0967 -2.2491 -5.1068 19 7 2.2864 -3.0700 -5.8977 20 6 4.4476 -2.1104 -5.4065 21 6 5.2535 -1.3013 -4.6297 22 6 4.7221 -0.6235 -3.5472 23 9 5.5136 0.1665 -2.7893 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7094 1.1616 3.4844 28 1 0.7857 -2.1445 -2.0711 29 1 2.4981 -2.6032 -1.9107 30 1 1.4461 -2.5751 -0.4752 31 1 1.5061 -1.6904 -3.7864 32 1 2.6668 -3.5423 -6.6548 33 1 1.3442 -3.1671 -5.6890 34 1 4.8683 -2.6377 -6.2499 35 1 6.3017 -1.1975 -4.8680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063084876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -48.100431 kcal Electronic energy + Delta-G solvation = -20317.609666 eV Core-core repulsion = 17037.245458 eV Total energy + Delta-G solvation = -3280.364208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -48.41328 -39.78701 -38.26500 -35.32938 -34.25615 -32.95675 -31.30090 -29.06736 -28.23032 -26.20298 -25.20745 -23.95335 -22.45081 -20.91866 -18.86671 -17.39232 -17.21627 -17.00638 -16.32033 -15.86927 -15.36419 -15.11123 -14.95613 -14.38167 -14.10059 -13.89123 -13.08564 -12.98297 -12.82073 -12.72143 -12.45617 -12.16048 -11.63493 -11.49336 -11.13857 -11.01056 -10.83496 -10.71013 -10.34884 -10.24642 -10.15007 -9.21893 -9.11771 -8.89624 -8.40634 -7.62534 -7.50108 -6.05266 -4.13394 1.02817 1.38822 3.26643 3.30203 3.35098 3.37686 3.65066 3.71261 4.04072 4.41085 4.51863 4.72061 4.87923 5.14212 5.25965 5.30539 5.67708 5.74797 5.83136 5.97845 6.05616 6.18096 6.25139 6.38411 6.73864 6.77720 6.84756 7.07023 7.28586 7.42391 7.53532 7.57443 7.72673 8.02884 8.20468 8.50279 8.82966 9.02201 9.52808 11.00128 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.005496 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.522685 B = 5093.332346 C = 5399.944028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.082 3.918 14 C 0.545 3.455 15 O -0.536 6.536 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.197 3.803 19 N -0.878 5.878 20 C -0.159 4.159 21 C -0.113 4.113 22 C 0.086 3.914 23 F -0.129 7.129 24 H 0.011 0.989 25 H 0.029 0.971 26 H 0.094 0.906 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.398 0.602 33 H 0.399 0.601 34 H 0.130 0.870 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -9.930 -16.114 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.061 4.061 14 C 0.331 3.669 15 O -0.414 6.414 16 C -0.104 4.104 17 C -0.165 4.165 18 C 0.093 3.907 19 N -0.418 5.418 20 C -0.182 4.182 21 C -0.132 4.132 22 C 0.064 3.936 23 F -0.108 7.108 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.147 0.853 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.448 -9.116 -15.777 18.385 hybrid contribution 0.197 -0.699 0.745 1.040 sum 2.645 -9.814 -15.031 18.146 Atomic orbital electron populations 1.22077 0.98002 0.99397 1.00879 1.18999 0.91008 0.94596 0.79644 0.91789 1.21278 1.31937 1.13111 0.90243 0.92235 1.24883 0.94906 0.94975 0.98935 1.69867 1.36270 1.22522 1.23888 0.86540 0.79309 0.79517 0.81936 1.21150 1.20240 1.20200 1.48168 1.48245 1.11672 1.23195 1.21757 0.98714 0.83320 1.02356 1.18046 0.79781 0.86865 0.82229 1.90770 1.60427 1.14971 1.75235 1.20067 0.92974 0.99095 0.98229 1.20720 1.00496 0.99388 0.95919 1.17614 0.90602 0.91524 0.90943 1.42397 1.11602 1.53435 1.34410 1.20452 0.91884 1.03470 1.02374 1.20793 1.00744 0.97470 0.94231 1.17425 0.87722 0.95467 0.92959 1.91536 1.72930 1.71727 1.74585 0.96961 0.95139 0.88753 0.92604 0.93987 0.92487 0.89924 0.84474 0.77430 0.77236 0.85260 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.95 6.91 -51.93 -0.36 1.59 16 4 C -0.53 -14.50 7.96 -34.44 -0.27 -14.77 16 5 H 0.06 1.61 7.42 -52.48 -0.39 1.22 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.58 -13.00 2.75 -176.43 -0.49 -13.49 16 13 C 0.08 1.43 7.99 59.85 0.48 1.91 16 14 C 0.55 12.38 7.02 -12.39 -0.09 12.29 16 15 O -0.54 -14.41 15.95 5.31 0.08 -14.32 16 16 C -0.10 -1.77 4.93 -104.93 -0.52 -2.28 16 17 C -0.14 -1.95 7.60 -38.97 -0.30 -2.25 16 18 C 0.20 2.14 6.75 -83.79 -0.57 1.58 16 19 N -0.88 -6.24 9.10 32.40 0.29 -5.94 16 20 C -0.16 -1.65 9.88 -39.32 -0.39 -2.04 16 21 C -0.11 -1.42 10.00 -39.59 -0.40 -1.82 16 22 C 0.09 1.48 7.25 -38.96 -0.28 1.19 16 23 F -0.13 -2.57 16.48 2.25 0.04 -2.54 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.61 7.04 -51.93 -0.37 0.25 16 29 H 0.06 0.88 6.23 -51.93 -0.32 0.56 16 30 H 0.08 1.51 7.10 -51.93 -0.37 1.14 16 31 H 0.14 1.73 6.21 -52.48 -0.33 1.40 16 32 H 0.40 1.92 8.84 -40.82 -0.36 1.56 16 33 H 0.40 2.35 8.84 -40.82 -0.36 1.99 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -33.29 297.61 -6.22 -39.51 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.97 Total: 1.85 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.27 Total: -1.08 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.44 Total: -44.17 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.32 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.29 -6.22 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.589 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds