Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47295 * 239.99262 * 2 1 3 5 5 H 1.07994 * 120.00357 * 268.24912 * 4 2 1 6 6 C 1.37882 * 119.99771 * 88.25482 * 4 2 1 7 7 N 1.31515 * 120.00426 * 169.31601 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 349.31431 * 6 4 2 9 9 H 1.48503 * 109.47473 * 90.15282 * 8 6 4 10 10 H 1.48504 * 109.47386 * 210.15514 * 8 6 4 11 11 H 1.48504 * 109.47136 * 330.15271 * 8 6 4 12 12 N 1.46503 * 109.46651 * 119.99640 * 2 1 3 13 13 C 1.46502 * 120.00009 * 60.00129 * 12 2 1 14 14 C 1.34775 * 119.99770 * 239.99926 * 12 2 1 15 15 O 1.21568 * 120.00348 * 7.13102 * 14 12 2 16 16 C 1.47708 * 119.99759 * 187.12496 * 14 12 2 17 17 C 1.39606 * 120.13356 * 323.39191 * 16 14 12 18 18 C 1.38516 * 119.79689 * 179.79003 * 17 16 14 19 19 N 1.39853 * 119.96348 * 180.22739 * 18 17 16 20 20 C 1.39065 * 120.06790 * 0.48260 * 18 17 16 21 21 C 1.38115 * 120.26069 * 359.74323 * 20 18 17 22 22 C 1.38316 * 120.20769 * 0.02562 * 21 20 18 23 23 F 1.35104 * 120.03726 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47625 * 294.51419 * 1 2 3 25 25 H 1.09008 * 109.46438 * 54.50903 * 1 2 3 26 26 H 1.08997 * 109.47004 * 174.50681 * 1 2 3 27 27 H 0.96991 * 120.00211 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47029 * 265.88609 * 13 12 2 29 29 H 1.08998 * 109.46790 * 145.89104 * 13 12 2 30 30 H 1.08993 * 109.46925 * 25.88776 * 13 12 2 31 31 H 1.07995 * 120.10058 * 359.97438 * 17 16 14 32 32 H 0.97001 * 120.00077 * 180.25620 * 19 18 17 33 33 H 0.96998 * 120.00574 * 0.25249 * 19 18 17 34 34 H 1.08001 * 119.86391 * 179.72283 * 20 18 17 35 35 H 1.08004 * 119.89209 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2394 -1.7699 -1.1954 6 6 2.2279 -0.0080 -2.4005 7 7 2.8593 -0.5707 -3.4077 8 14 1.5959 1.7429 -2.5555 9 1 2.6476 2.6904 -2.1065 10 1 1.2513 2.0213 -3.9729 11 1 0.3863 1.9092 -1.7102 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 2.9806 1.1594 1.9609 16 6 3.4144 -0.7694 3.2046 17 6 2.7225 -1.8070 3.8322 18 6 3.3135 -2.4934 4.8801 19 7 2.6254 -3.5365 5.5081 20 6 4.5881 -2.1430 5.3118 21 6 5.2731 -1.1139 4.6959 22 6 4.6954 -0.4241 3.6454 23 9 5.3684 0.5824 3.0458 24 1 -0.3634 0.4264 0.9350 25 1 -0.3632 0.5967 -0.8368 26 1 -0.3633 -1.0229 -0.0984 27 1 2.9965 -0.0767 -4.2310 28 1 0.7782 -2.1444 2.0609 29 1 2.4932 -2.6001 1.9221 30 1 1.4582 -2.5783 0.4742 31 1 1.7307 -2.0755 3.4996 32 1 3.0372 -4.0152 6.2444 33 1 1.7363 -3.7814 5.2075 34 1 5.0440 -2.6775 6.1321 35 1 6.2626 -0.8464 5.0363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063084877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = -36.091306 kcal Electronic energy + Delta-G solvation = -20412.832000 eV Core-core repulsion = 17132.988547 eV Total energy + Delta-G solvation = -3279.843454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.39258 -39.91843 -38.32819 -35.48648 -34.26202 -32.92076 -31.55346 -29.73047 -28.27052 -26.43708 -25.20919 -23.94917 -22.50114 -20.88065 -18.86829 -17.57048 -17.19428 -17.14365 -16.61043 -15.88577 -15.45453 -15.18732 -14.98720 -14.37095 -14.16200 -13.90624 -13.18633 -12.97332 -12.81290 -12.70125 -12.61350 -12.30226 -12.17780 -11.78641 -11.57179 -11.23116 -10.89998 -10.62945 -10.35808 -10.23166 -9.70886 -9.32259 -9.17867 -8.91558 -8.59168 -7.72699 -7.49026 -6.16278 -4.16091 0.97484 1.38131 3.22138 3.31622 3.38904 3.43105 3.62779 3.68709 3.99332 4.39947 4.50814 4.67623 4.84051 5.08820 5.24498 5.28143 5.64139 5.68997 5.76431 5.87575 6.02891 6.16096 6.20871 6.28339 6.34602 6.41214 6.58740 6.75357 6.94415 7.08407 7.28318 7.48508 7.56733 7.63481 8.10700 8.47837 8.83672 8.89519 9.47022 10.95720 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.005998 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.132320 B = 4667.072644 C = 5127.218378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.864 3.136 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.252 1.252 12 N -0.577 5.577 13 C 0.074 3.926 14 C 0.547 3.453 15 O -0.539 6.539 16 C -0.105 4.105 17 C -0.149 4.149 18 C 0.194 3.806 19 N -0.878 5.878 20 C -0.155 4.155 21 C -0.116 4.116 22 C 0.093 3.907 23 F -0.127 7.127 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.398 0.602 33 H 0.399 0.601 34 H 0.130 0.870 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -7.107 17.938 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.691 3.309 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.177 1.177 12 N -0.307 5.307 13 C -0.069 4.069 14 C 0.334 3.666 15 O -0.417 6.417 16 C -0.110 4.110 17 C -0.172 4.172 18 C 0.090 3.910 19 N -0.418 5.418 20 C -0.178 4.178 21 C -0.135 4.135 22 C 0.071 3.929 23 F -0.105 7.105 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.148 0.852 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.622 -6.374 17.577 18.708 hybrid contribution -0.287 0.580 -0.199 0.677 sum -0.910 -5.794 17.378 18.341 Atomic orbital electron populations 1.22442 0.98459 1.01066 0.99602 1.19202 0.90626 0.94835 0.82567 0.92018 1.21085 1.45415 0.97340 0.93047 0.90383 1.24884 0.93572 0.97983 0.95845 1.69925 1.39059 1.38375 1.05118 0.87122 0.80878 0.85477 0.77439 1.19812 1.21222 1.17689 1.48022 1.48443 1.11676 1.22587 1.22062 0.98822 0.83362 1.02677 1.18057 0.79647 0.86939 0.81986 1.90760 1.61757 1.14365 1.74829 1.20009 0.94409 0.97992 0.98563 1.21115 1.01856 0.96912 0.97293 1.17627 0.91720 0.89412 0.92220 1.42387 1.20856 1.38131 1.40471 1.20478 0.94135 1.00275 1.02935 1.20800 1.00826 0.96389 0.95515 1.17442 0.90722 0.89542 0.95222 1.91548 1.79118 1.57458 1.82379 0.95462 0.91887 0.93138 0.92411 0.93678 0.91418 0.89840 0.83588 0.77417 0.77253 0.85236 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.85 37.16 0.33 -3.01 16 2 C 0.23 5.62 2.20 -69.08 -0.15 5.47 16 3 H 0.06 1.68 5.11 -51.93 -0.27 1.42 16 4 C -0.53 -14.74 8.67 -34.44 -0.30 -15.03 16 5 H 0.08 2.28 6.92 -52.49 -0.36 1.92 16 6 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 7 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.86 21.75 26.41 -169.99 -4.49 17.26 16 9 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.25 -5.93 5.15 56.52 0.29 -5.64 16 12 N -0.58 -12.46 2.75 -176.43 -0.49 -12.94 16 13 C 0.07 1.23 7.93 59.85 0.47 1.70 16 14 C 0.55 12.16 7.27 -12.39 -0.09 12.07 16 15 O -0.54 -14.05 15.47 5.31 0.08 -13.96 16 16 C -0.10 -1.86 5.37 -104.93 -0.56 -2.43 16 17 C -0.15 -2.00 7.34 -38.97 -0.29 -2.28 16 18 C 0.19 2.08 6.75 -83.79 -0.57 1.52 16 19 N -0.88 -6.07 9.10 32.40 0.29 -5.78 16 20 C -0.16 -1.62 9.88 -39.32 -0.39 -2.01 16 21 C -0.12 -1.47 10.00 -39.60 -0.40 -1.86 16 22 C 0.09 1.60 7.24 -38.97 -0.28 1.31 16 23 F -0.13 -2.54 16.13 2.25 0.04 -2.51 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.37 5.42 -51.92 -0.28 1.09 16 26 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.04 0.60 7.03 -51.93 -0.36 0.24 16 29 H 0.07 1.01 5.48 -51.93 -0.28 0.72 16 30 H 0.08 1.48 6.65 -51.93 -0.35 1.13 16 31 H 0.15 1.74 4.98 -52.49 -0.26 1.47 16 32 H 0.40 1.88 8.84 -40.82 -0.36 1.52 16 33 H 0.40 2.22 8.84 -40.82 -0.36 1.86 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -34.69 289.86 -5.55 -40.24 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.81 Total: 1.80 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.30 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.58 Total: -44.90 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.49 Total: 17.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.69 -5.55 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.150 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds