Wall clock time and date at job start Mon Mar 30 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47295 * 239.99262 * 2 1 3 5 5 H 1.07994 * 120.00357 * 268.24912 * 4 2 1 6 6 C 1.37882 * 119.99771 * 88.25482 * 4 2 1 7 7 N 1.31515 * 120.00426 * 169.31601 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 349.31431 * 6 4 2 9 9 H 1.48503 * 109.47473 * 90.15282 * 8 6 4 10 10 H 1.48504 * 109.47386 * 210.15514 * 8 6 4 11 11 H 1.48504 * 109.47136 * 330.15271 * 8 6 4 12 12 N 1.46503 * 109.46651 * 119.99640 * 2 1 3 13 13 C 1.46502 * 120.00009 * 60.00129 * 12 2 1 14 14 C 1.34775 * 119.99770 * 239.99926 * 12 2 1 15 15 O 1.21568 * 120.00348 * 7.13102 * 14 12 2 16 16 C 1.47708 * 119.99759 * 187.12496 * 14 12 2 17 17 C 1.39606 * 120.13356 * 323.39191 * 16 14 12 18 18 C 1.38516 * 119.79689 * 179.79003 * 17 16 14 19 19 N 1.39853 * 119.96348 * 180.22739 * 18 17 16 20 20 C 1.39065 * 120.06790 * 0.48260 * 18 17 16 21 21 C 1.38115 * 120.26069 * 359.74323 * 20 18 17 22 22 C 1.38316 * 120.20769 * 0.02562 * 21 20 18 23 23 F 1.35104 * 120.03726 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47625 * 294.51419 * 1 2 3 25 25 H 1.09008 * 109.46438 * 54.50903 * 1 2 3 26 26 H 1.08997 * 109.47004 * 174.50681 * 1 2 3 27 27 H 0.96991 * 120.00211 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47029 * 265.88609 * 13 12 2 29 29 H 1.08998 * 109.46790 * 145.89104 * 13 12 2 30 30 H 1.08993 * 109.46925 * 25.88776 * 13 12 2 31 31 H 1.07995 * 120.10058 * 359.97438 * 17 16 14 32 32 H 0.97001 * 120.00077 * 180.25620 * 19 18 17 33 33 H 0.96998 * 120.00574 * 0.25249 * 19 18 17 34 34 H 1.08001 * 119.86391 * 179.72283 * 20 18 17 35 35 H 1.08004 * 119.89209 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2394 -1.7699 -1.1954 6 6 2.2279 -0.0080 -2.4005 7 7 2.8593 -0.5707 -3.4077 8 14 1.5959 1.7429 -2.5555 9 1 2.6476 2.6904 -2.1065 10 1 1.2513 2.0213 -3.9729 11 1 0.3863 1.9092 -1.7102 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 2.9806 1.1594 1.9609 16 6 3.4144 -0.7694 3.2046 17 6 2.7225 -1.8070 3.8322 18 6 3.3135 -2.4934 4.8801 19 7 2.6254 -3.5365 5.5081 20 6 4.5881 -2.1430 5.3118 21 6 5.2731 -1.1139 4.6959 22 6 4.6954 -0.4241 3.6454 23 9 5.3684 0.5824 3.0458 24 1 -0.3634 0.4264 0.9350 25 1 -0.3632 0.5967 -0.8368 26 1 -0.3633 -1.0229 -0.0984 27 1 2.9965 -0.0767 -4.2310 28 1 0.7782 -2.1444 2.0609 29 1 2.4932 -2.6001 1.9221 30 1 1.4582 -2.5783 0.4742 31 1 1.7307 -2.0755 3.4996 32 1 3.0372 -4.0152 6.2444 33 1 1.7363 -3.7814 5.2075 34 1 5.0440 -2.6775 6.1321 35 1 6.2626 -0.8464 5.0363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063084877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:18 Heat of formation + Delta-G solvation = -62.352266 kcal Electronic energy + Delta-G solvation = -20413.970761 eV Core-core repulsion = 17132.988547 eV Total energy + Delta-G solvation = -3280.982214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.72763 -41.30683 -39.59645 -37.27665 -35.19543 -34.79975 -33.13431 -31.24323 -29.23095 -27.86370 -27.24765 -25.25358 -23.66051 -22.36224 -20.44223 -19.23776 -18.40151 -18.36324 -18.03325 -17.51719 -16.80042 -16.52330 -16.26912 -15.86450 -15.77763 -15.17523 -14.75320 -14.56158 -14.16923 -13.97928 -13.95022 -13.82386 -13.64440 -13.45763 -13.21701 -12.88974 -12.58803 -12.20586 -12.09525 -11.61466 -11.34803 -11.31265 -10.85880 -10.76181 -10.04632 -9.43704 -8.39317 -8.38239 -6.41591 -0.13164 0.35848 1.27366 1.33930 1.40245 1.74592 2.18815 2.29659 2.72810 2.96149 3.01954 3.41032 3.52555 3.81694 4.14927 4.26912 4.38516 4.45704 4.57527 4.69558 4.72466 4.73270 4.87433 4.95271 5.10234 5.12880 5.17746 5.22939 5.33879 5.54581 5.73214 5.75277 6.12786 6.56016 6.61325 6.63314 7.07948 7.16135 7.28507 8.75894 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026110 B = 0.005998 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.132320 B = 4667.072644 C = 5127.218378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.227 3.773 3 H 0.030 0.970 4 C -0.527 4.527 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.933 5.933 8 Si 0.916 3.084 9 H -0.291 1.291 10 H -0.275 1.275 11 H -0.225 1.225 12 N -0.584 5.584 13 C 0.071 3.929 14 C 0.536 3.464 15 O -0.595 6.595 16 C -0.131 4.131 17 C -0.152 4.152 18 C 0.212 3.788 19 N -0.856 5.856 20 C -0.140 4.140 21 C -0.105 4.105 22 C 0.043 3.957 23 F -0.159 7.159 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.268 0.732 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.410 0.590 34 H 0.175 0.825 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 -9.192 21.185 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.124 3.876 3 H 0.048 0.952 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.172 4.172 7 N -0.572 5.572 8 Si 0.740 3.260 9 H -0.218 1.218 10 H -0.200 1.200 11 H -0.148 1.148 12 N -0.314 5.314 13 C -0.070 4.070 14 C 0.325 3.675 15 O -0.477 6.477 16 C -0.136 4.136 17 C -0.175 4.175 18 C 0.105 3.895 19 N -0.397 5.397 20 C -0.162 4.162 21 C -0.124 4.124 22 C 0.021 3.979 23 F -0.137 7.137 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.245 0.755 33 H 0.240 0.760 34 H 0.192 0.808 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.898 -8.546 20.871 22.633 hybrid contribution 0.134 1.028 -1.030 1.461 sum -1.764 -7.518 19.841 21.291 Atomic orbital electron populations 1.22265 0.95363 1.02396 1.00455 1.19009 0.92889 0.93037 0.82615 0.95214 1.21320 1.44448 0.96410 0.94316 0.92831 1.25635 0.94054 1.01769 0.95782 1.70030 1.41113 1.40128 1.05895 0.86311 0.80868 0.80513 0.78271 1.21828 1.20006 1.14785 1.48031 1.48392 1.13486 1.21452 1.22343 1.01286 0.80486 1.02910 1.18842 0.78906 0.86692 0.83014 1.90703 1.63474 1.16914 1.76624 1.19759 0.95295 1.00032 0.98493 1.21156 1.02265 0.96077 0.97985 1.17671 0.91791 0.89172 0.90875 1.42387 1.21043 1.36335 1.39930 1.20971 0.93568 0.98841 1.02867 1.21092 1.01770 0.95878 0.93634 1.18007 0.91455 0.90770 0.97706 1.91453 1.79768 1.59170 1.83354 0.93446 0.92361 0.91292 0.92282 0.89441 0.89624 0.91360 0.82140 0.75490 0.76003 0.80797 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.01 8.85 71.98 0.64 -5.38 16 2 C 0.23 11.31 2.20 44.24 0.10 11.41 16 3 H 0.03 1.68 5.11 -2.39 -0.01 1.67 16 4 C -0.53 -30.06 8.67 25.60 0.22 -29.84 16 5 H 0.05 3.25 6.92 -2.91 -0.02 3.23 16 6 C 0.03 1.62 5.47 84.66 0.46 2.09 16 7 N -0.93 -58.51 13.96 21.45 0.30 -58.22 16 8 Si 0.92 45.93 26.41 68.60 1.81 47.74 16 9 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.22 -10.16 5.15 99.48 0.51 -9.65 16 12 N -0.58 -25.41 2.75 -830.38 -2.29 -27.70 16 13 C 0.07 2.25 7.93 127.77 1.01 3.26 16 14 C 0.54 24.59 7.27 86.75 0.63 25.22 16 15 O -0.59 -32.80 15.47 -3.93 -0.06 -32.86 16 16 C -0.13 -4.65 5.37 -20.06 -0.11 -4.76 16 17 C -0.15 -3.66 7.34 22.67 0.17 -3.49 16 18 C 0.21 3.58 6.75 38.13 0.26 3.83 16 19 N -0.86 -6.95 9.10 -51.40 -0.47 -7.41 16 20 C -0.14 -2.24 9.88 22.44 0.22 -2.02 16 21 C -0.10 -2.40 10.00 22.26 0.22 -2.18 16 22 C 0.04 1.48 7.24 22.67 0.16 1.65 16 23 F -0.16 -6.79 16.13 44.97 0.73 -6.06 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 2.42 5.42 -2.38 -0.01 2.41 16 26 H 0.07 2.54 7.85 -2.39 -0.02 2.53 16 27 H 0.27 15.80 8.31 -92.72 -0.77 15.03 16 28 H 0.09 2.02 7.03 -2.39 -0.02 2.00 16 29 H 0.09 2.39 5.48 -2.39 -0.01 2.38 16 30 H 0.07 2.37 6.65 -2.39 -0.02 2.35 16 31 H 0.16 3.23 4.98 -2.91 -0.01 3.22 16 32 H 0.41 1.29 8.84 -92.71 -0.82 0.47 16 33 H 0.41 2.25 8.84 -92.71 -0.82 1.43 16 34 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -82.34 289.86 3.34 -79.00 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -0.67 Total: 5.70 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 3.99 Total: -0.20 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -2.45 Total: -93.33 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.06 Total: -32.86 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.73 Total: -6.06 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.81 Total: 47.74 kcal Total: -82.34 3.34 -79.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.648 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds