Wall clock time and date at job start Mon Mar 30 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50697 * 109.47489 * 120.00669 * 2 1 3 5 5 H 1.07995 * 120.00433 * 119.99616 * 4 2 1 6 6 C 1.37876 * 119.99702 * 299.99814 * 4 2 1 7 7 N 1.31508 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47549 * 59.99648 * 8 6 4 10 10 H 1.48508 * 109.47052 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47278 * 299.99475 * 8 6 4 12 12 N 1.46506 * 109.46971 * 240.00647 * 2 1 3 13 13 C 1.46505 * 119.99595 * 299.99758 * 12 2 1 14 14 C 1.34775 * 120.00302 * 119.99891 * 12 2 1 15 15 O 1.21599 * 120.00054 * 4.48262 * 14 12 2 16 16 C 1.47430 * 119.99746 * 184.47973 * 14 12 2 17 17 C 1.39760 * 120.20059 * 309.80586 * 16 14 12 18 18 C 1.37932 * 119.90211 * 180.02562 * 17 16 14 19 19 F 1.35095 * 119.85191 * 180.02562 * 18 17 16 20 20 C 1.38789 * 120.30124 * 359.97212 * 18 17 16 21 21 C 1.37964 * 120.39860 * 0.05048 * 20 18 17 22 22 C 1.38932 * 120.09063 * 0.24653 * 21 20 18 23 23 N 1.39001 * 120.14620 * 179.72515 * 22 21 20 24 24 H 1.08997 * 109.47080 * 59.99568 * 1 2 3 25 25 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46873 * 299.99357 * 1 2 3 27 27 H 0.97001 * 120.00489 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47319 * 273.18268 * 13 12 2 29 29 H 1.09000 * 109.47313 * 33.18926 * 13 12 2 30 30 H 1.09005 * 109.47147 * 153.18602 * 13 12 2 31 31 H 1.07996 * 120.04741 * 0.04770 * 17 16 14 32 32 H 1.08003 * 119.80017 * 180.02562 * 20 18 17 33 33 H 1.08003 * 119.95412 * 179.97438 * 21 20 18 34 34 H 0.96991 * 120.00250 * 354.67705 * 23 22 21 35 35 H 0.97000 * 119.99629 * 174.68144 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3227 -1.1198 4.0077 9 1 3.8077 -1.1193 4.0075 10 1 1.8281 -0.4195 5.2204 11 1 1.8282 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0835 15 8 3.1543 1.1023 -1.8516 16 6 3.2028 -0.6984 -3.3349 17 6 3.7681 -1.9762 -3.3012 18 6 4.1497 -2.5905 -4.4757 19 9 4.6955 -3.8258 -4.4420 20 6 3.9744 -1.9458 -5.6922 21 6 3.4181 -0.6842 -5.7399 22 6 3.0336 -0.0476 -4.5664 23 7 2.4782 1.2258 -4.6126 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 0.7097 1.1616 3.4845 28 1 2.3844 -2.7377 -0.9242 29 1 0.6663 -2.2859 -1.0346 30 1 1.6789 -2.2994 -2.4984 31 1 3.9056 -2.4819 -2.3569 32 1 4.2757 -2.4345 -6.6070 33 1 3.2854 -0.1889 -6.6905 34 1 2.4292 1.7032 -5.4555 35 1 2.1398 1.6370 -3.8019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063084892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:21 Heat of formation + Delta-G solvation = -72.022508 kcal Electronic energy + Delta-G solvation = -20311.976613 eV Core-core repulsion = 17030.575066 eV Total energy + Delta-G solvation = -3281.401547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.66387 -41.41247 -39.31597 -37.20449 -35.38441 -34.76549 -32.67554 -30.84927 -29.26069 -27.72651 -27.30697 -25.24446 -23.54636 -22.50841 -20.44953 -18.68490 -18.50924 -18.13983 -18.07059 -17.51972 -16.88029 -16.44019 -16.14337 -15.97784 -15.80069 -15.00641 -14.70260 -14.41168 -14.19051 -13.93340 -13.79031 -13.54543 -13.43128 -13.07597 -12.95180 -12.72251 -12.66809 -12.32687 -12.17835 -12.14211 -11.37530 -11.20857 -10.77675 -10.52014 -10.03243 -9.39934 -8.48373 -8.15621 -6.32171 -0.01963 0.39070 1.40735 1.42896 1.50198 1.75743 2.26812 2.45706 2.68387 2.88973 3.11965 3.39773 3.64784 3.81494 4.10725 4.32422 4.37928 4.59292 4.63924 4.74456 4.86087 4.89382 4.96888 5.02626 5.08829 5.13876 5.22937 5.44036 5.59677 5.64425 5.81697 6.00395 6.14287 6.37010 6.72509 6.74164 6.88215 7.25340 7.42721 8.88087 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.005592 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.183765 B = 5005.945811 C = 5685.571438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.263 1.263 12 N -0.589 5.589 13 C 0.083 3.917 14 C 0.547 3.453 15 O -0.595 6.595 16 C -0.204 4.204 17 C -0.078 4.078 18 C 0.017 3.983 19 F -0.149 7.149 20 C -0.070 4.070 21 C -0.166 4.166 22 C 0.250 3.750 23 N -0.854 5.854 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.415 0.585 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -6.147 -17.753 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.032 0.968 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.188 1.188 12 N -0.318 5.318 13 C -0.060 4.060 14 C 0.337 3.663 15 O -0.478 6.478 16 C -0.213 4.213 17 C -0.098 4.098 18 C -0.005 4.005 19 F -0.128 7.128 20 C -0.089 4.089 21 C -0.188 4.188 22 C 0.139 3.861 23 N -0.391 5.391 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.247 0.753 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.836 -5.502 -17.459 18.398 hybrid contribution 0.218 0.019 1.489 1.505 sum 2.054 -5.483 -15.970 17.010 Atomic orbital electron populations 1.21879 0.96837 1.00167 1.00194 1.18592 0.91754 0.92306 0.81338 0.96759 1.21528 1.32077 1.13105 0.91299 0.92498 1.25686 0.95026 0.95633 1.01855 1.69991 1.37156 1.23699 1.24530 0.85543 0.78339 0.79031 0.78301 1.20483 1.20656 1.18807 1.48172 1.48227 1.13147 1.22256 1.21902 1.01529 0.80729 1.01809 1.18645 0.78220 0.85532 0.83905 1.90697 1.57529 1.20829 1.78732 1.19076 1.13032 0.97174 0.92012 1.21043 0.96969 0.93177 0.98619 1.17314 1.05935 0.82666 0.94542 1.91456 1.84195 1.39830 1.97366 1.21330 0.96140 0.94412 0.97016 1.20757 1.05408 0.95785 0.96881 1.17925 0.89982 0.85893 0.92261 1.42559 1.66769 1.15413 1.14389 0.95763 0.93517 0.91148 0.92557 0.92757 0.90903 0.89481 0.85080 0.81112 0.80908 0.75315 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.94 71.98 0.64 -5.71 16 2 C 0.26 13.74 2.63 44.24 0.12 13.85 16 3 H 0.01 0.89 6.91 -2.39 -0.02 0.88 16 4 C -0.54 -29.94 8.37 25.60 0.21 -29.73 16 5 H 0.06 3.09 7.56 -2.91 -0.02 3.06 16 6 C 0.02 0.99 5.30 84.66 0.45 1.43 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.59 -25.77 2.75 -830.67 -2.29 -28.06 16 13 C 0.08 2.85 8.38 127.77 1.07 3.92 16 14 C 0.55 23.50 6.60 86.66 0.57 24.08 16 15 O -0.59 -30.08 15.00 -4.03 -0.06 -30.14 16 16 C -0.20 -6.72 4.87 -19.98 -0.10 -6.82 16 17 C -0.08 -2.29 7.61 22.57 0.17 -2.12 16 18 C 0.02 0.41 7.28 22.33 0.16 0.57 16 19 F -0.15 -3.79 17.26 44.97 0.78 -3.01 16 20 C -0.07 -1.26 10.00 22.34 0.22 -1.03 16 21 C -0.17 -2.98 9.88 22.37 0.22 -2.76 16 22 C 0.25 6.53 6.75 38.68 0.26 6.79 16 23 N -0.85 -20.56 8.88 -50.90 -0.45 -21.01 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 2.05 6.68 -2.39 -0.02 2.03 16 26 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.05 1.82 7.51 -2.39 -0.02 1.81 16 29 H 0.07 2.46 6.44 -2.39 -0.02 2.45 16 30 H 0.09 2.51 5.71 -2.38 -0.01 2.50 16 31 H 0.13 3.97 6.68 -2.91 -0.02 3.95 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.42 6.54 8.84 -92.72 -0.82 5.72 16 35 H 0.40 12.08 6.82 -92.71 -0.63 11.45 16 Total: -1.00 -68.93 294.47 3.95 -64.98 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.30 Total: 21.62 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 4.01 Total: 2.48 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.50 Total: -101.51 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.06 Total: -30.14 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.93 3.95 -64.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.042 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds