Wall clock time and date at job start Mon Mar 30 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46506 * 2 1 4 4 C 1.50696 * 109.47235 * 240.00314 * 2 1 3 5 5 H 1.08004 * 119.99991 * 239.99583 * 4 2 1 6 6 C 1.37876 * 120.00065 * 59.99737 * 4 2 1 7 7 N 1.31517 * 120.00169 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47084 * 59.99792 * 8 6 4 10 10 H 1.48493 * 109.47396 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47023 * 299.99985 * 8 6 4 12 12 N 1.46501 * 109.47253 * 119.99848 * 2 1 3 13 13 C 1.46501 * 119.99824 * 60.00470 * 12 2 1 14 14 C 1.34780 * 119.99823 * 240.00127 * 12 2 1 15 15 O 1.21600 * 120.00266 * 5.33232 * 14 12 2 16 16 C 1.47433 * 119.99503 * 185.32433 * 14 12 2 17 17 C 1.39768 * 120.19294 * 45.33644 * 16 14 12 18 18 C 1.37942 * 119.89469 * 179.97438 * 17 16 14 19 19 F 1.35103 * 119.84610 * 179.97438 * 18 17 16 20 20 C 1.38780 * 120.30215 * 0.02562 * 18 17 16 21 21 C 1.37963 * 120.40031 * 359.95622 * 20 18 17 22 22 C 1.38929 * 120.09368 * 359.76264 * 21 20 18 23 23 N 1.38992 * 120.15134 * 180.25569 * 22 21 20 24 24 H 1.08999 * 109.47487 * 299.99723 * 1 2 3 25 25 H 1.08997 * 109.47486 * 60.00271 * 1 2 3 26 26 H 1.09004 * 109.46506 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00128 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46784 * 95.06701 * 13 12 2 29 29 H 1.09001 * 109.47167 * 335.06863 * 13 12 2 30 30 H 1.08996 * 109.46963 * 215.06622 * 13 12 2 31 31 H 1.07994 * 120.05435 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.80153 * 179.97438 * 20 18 17 33 33 H 1.08005 * 119.95240 * 180.02562 * 21 20 18 34 34 H 0.97005 * 120.00002 * 177.78470 * 23 22 21 35 35 H 0.97001 * 120.00301 * 357.78498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8279 -0.4190 -5.2204 11 1 3.8076 -1.1186 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0073 1.1532 1.9424 16 6 3.3811 -0.7602 3.2248 17 6 3.9875 -2.0044 3.0304 18 6 4.5360 -2.6768 4.1027 19 9 5.1214 -3.8797 3.9138 20 6 4.4884 -2.1239 5.3746 21 6 3.8932 -0.8964 5.5804 22 6 3.3407 -0.2021 4.5114 23 7 2.7455 1.0371 4.7165 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.7088 1.1615 -3.4844 28 1 2.4602 -2.7357 1.0509 29 1 0.7344 -2.3239 0.9086 30 1 1.5357 -2.2635 2.4968 31 1 4.0264 -2.4386 2.0424 32 1 4.9201 -2.6576 6.2085 33 1 3.8606 -0.4726 6.5733 34 1 2.3891 1.5345 3.9638 35 1 2.6866 1.4046 5.6123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063084893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:31 Heat of formation + Delta-G solvation = -52.672875 kcal Electronic energy + Delta-G solvation = -20320.337096 eV Core-core repulsion = 17039.774611 eV Total energy + Delta-G solvation = -3280.562484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 6.13 seconds Orbital eigenvalues (eV) -48.59508 -40.03696 -37.96197 -35.50647 -34.17701 -32.95538 -31.28667 -29.16281 -28.15219 -26.22177 -25.24460 -23.95203 -22.35419 -20.97931 -18.92292 -17.37323 -17.13152 -17.04130 -16.33796 -15.93489 -15.34832 -15.22119 -14.94435 -14.44544 -14.23273 -13.86722 -13.09918 -12.97087 -12.81917 -12.80252 -12.51587 -12.09953 -11.59947 -11.53869 -11.23077 -11.06200 -10.82725 -10.73319 -10.36164 -10.28676 -10.18576 -9.22769 -9.17525 -8.93431 -8.44870 -7.66992 -7.40864 -6.09405 -4.17733 1.05092 1.45005 3.19850 3.27782 3.32709 3.35267 3.78857 3.90418 3.95108 4.37941 4.50008 4.75841 4.90108 5.15019 5.22067 5.33219 5.68822 5.79808 5.84533 6.02829 6.08791 6.19460 6.22546 6.31944 6.73355 6.78992 6.84070 7.01924 7.35786 7.45676 7.48940 7.67943 7.82509 7.97986 8.15625 8.46815 8.77747 8.96428 9.48956 10.95784 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.005737 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.049807 B = 4879.840891 C = 5618.263494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.085 3.915 14 C 0.554 3.446 15 O -0.554 6.554 16 C -0.177 4.177 17 C -0.069 4.069 18 C 0.023 3.977 19 F -0.147 7.147 20 C -0.087 4.087 21 C -0.185 4.185 22 C 0.257 3.743 23 N -0.859 5.859 24 H 0.011 0.989 25 H 0.094 0.906 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.413 0.587 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -5.051 15.090 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.059 4.059 14 C 0.342 3.658 15 O -0.435 6.435 16 C -0.185 4.185 17 C -0.089 4.089 18 C 0.001 3.999 19 F -0.126 7.126 20 C -0.107 4.107 21 C -0.208 4.208 22 C 0.147 3.853 23 N -0.398 5.398 24 H 0.030 0.970 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.246 0.754 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.441 -4.348 14.783 15.601 hybrid contribution 0.305 -0.518 -0.868 1.056 sum 2.746 -4.867 13.915 14.995 Atomic orbital electron populations 1.22096 0.98109 0.99456 1.00872 1.18996 0.91013 0.94516 0.79725 0.91792 1.21277 1.32016 1.13086 0.90230 0.92270 1.24885 0.94893 0.94958 0.98965 1.69866 1.36263 1.22543 1.23919 0.86540 0.79278 0.79589 0.81903 1.20185 1.21154 1.20218 1.48200 1.47939 1.11829 1.23153 1.21693 1.01394 0.82942 0.99839 1.17971 0.79253 0.86654 0.81944 1.90700 1.61964 1.15054 1.75780 1.19425 1.08956 0.96797 0.93362 1.21212 0.95513 0.93057 0.99090 1.17212 1.04271 0.84102 0.94270 1.91461 1.82600 1.42519 1.96018 1.20903 0.98643 0.95515 0.95608 1.20339 1.05997 0.96523 0.97960 1.17674 0.89749 0.85920 0.91984 1.42664 1.65405 1.18981 1.12716 0.96963 0.88734 0.95031 0.92598 0.93271 0.90505 0.92765 0.83969 0.84886 0.85008 0.75360 0.77542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 2 C 0.26 6.49 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 4 C -0.53 -14.15 8.37 -34.44 -0.29 -14.44 16 5 H 0.06 1.56 7.65 -52.48 -0.40 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.58 -12.39 2.75 -176.53 -0.49 -12.87 16 13 C 0.09 1.47 8.23 59.85 0.49 1.97 16 14 C 0.55 11.54 6.80 -12.51 -0.09 11.46 16 15 O -0.55 -13.17 14.56 5.28 0.08 -13.09 16 16 C -0.18 -2.97 4.85 -104.80 -0.51 -3.48 16 17 C -0.07 -1.06 7.99 -39.12 -0.31 -1.37 16 18 C 0.02 0.31 7.28 -39.49 -0.29 0.02 16 19 F -0.15 -2.08 17.26 2.25 0.04 -2.04 16 20 C -0.09 -1.00 10.00 -39.48 -0.39 -1.39 16 21 C -0.19 -2.09 9.88 -39.43 -0.39 -2.48 16 22 C 0.26 3.63 6.74 -83.58 -0.56 3.07 16 23 N -0.86 -10.95 8.92 32.56 0.29 -10.66 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.69 6.67 -51.93 -0.35 0.34 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 0.81 6.75 -51.93 -0.35 0.46 16 29 H 0.08 1.34 6.44 -51.93 -0.33 1.00 16 30 H 0.05 0.81 6.82 -51.93 -0.35 0.46 16 31 H 0.14 2.21 6.28 -52.49 -0.33 1.88 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.41 6.26 6.48 -40.82 -0.26 6.00 16 35 H 0.40 3.57 8.84 -40.82 -0.36 3.21 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -30.28 294.16 -6.14 -36.42 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.82 Total: 7.87 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.28 Total: -1.78 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.43 Total: -47.78 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.28 -6.14 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.13 seconds