Wall clock time and date at job start Mon Mar 30 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46506 * 2 1 4 4 C 1.50696 * 109.47235 * 240.00314 * 2 1 3 5 5 H 1.08004 * 119.99991 * 239.99583 * 4 2 1 6 6 C 1.37876 * 120.00065 * 59.99737 * 4 2 1 7 7 N 1.31517 * 120.00169 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47084 * 59.99792 * 8 6 4 10 10 H 1.48493 * 109.47396 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47023 * 299.99985 * 8 6 4 12 12 N 1.46501 * 109.47253 * 119.99848 * 2 1 3 13 13 C 1.46501 * 119.99824 * 60.00470 * 12 2 1 14 14 C 1.34780 * 119.99823 * 240.00127 * 12 2 1 15 15 O 1.21600 * 120.00266 * 5.33232 * 14 12 2 16 16 C 1.47433 * 119.99503 * 185.32433 * 14 12 2 17 17 C 1.39768 * 120.19294 * 45.33644 * 16 14 12 18 18 C 1.37942 * 119.89469 * 179.97438 * 17 16 14 19 19 F 1.35103 * 119.84610 * 179.97438 * 18 17 16 20 20 C 1.38780 * 120.30215 * 0.02562 * 18 17 16 21 21 C 1.37963 * 120.40031 * 359.95622 * 20 18 17 22 22 C 1.38929 * 120.09368 * 359.76264 * 21 20 18 23 23 N 1.38992 * 120.15134 * 180.25569 * 22 21 20 24 24 H 1.08999 * 109.47487 * 299.99723 * 1 2 3 25 25 H 1.08997 * 109.47486 * 60.00271 * 1 2 3 26 26 H 1.09004 * 109.46506 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00128 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46784 * 95.06701 * 13 12 2 29 29 H 1.09001 * 109.47167 * 335.06863 * 13 12 2 30 30 H 1.08996 * 109.46963 * 215.06622 * 13 12 2 31 31 H 1.07994 * 120.05435 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.80153 * 179.97438 * 20 18 17 33 33 H 1.08005 * 119.95240 * 180.02562 * 21 20 18 34 34 H 0.97005 * 120.00002 * 177.78470 * 23 22 21 35 35 H 0.97001 * 120.00301 * 357.78498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8279 -0.4190 -5.2204 11 1 3.8076 -1.1186 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0073 1.1532 1.9424 16 6 3.3811 -0.7602 3.2248 17 6 3.9875 -2.0044 3.0304 18 6 4.5360 -2.6768 4.1027 19 9 5.1214 -3.8797 3.9138 20 6 4.4884 -2.1239 5.3746 21 6 3.8932 -0.8964 5.5804 22 6 3.3407 -0.2021 4.5114 23 7 2.7455 1.0371 4.7165 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.7088 1.1615 -3.4844 28 1 2.4602 -2.7357 1.0509 29 1 0.7344 -2.3239 0.9086 30 1 1.5357 -2.2635 2.4968 31 1 4.0264 -2.4386 2.0424 32 1 4.9201 -2.6576 6.2085 33 1 3.8606 -0.4726 6.5733 34 1 2.3891 1.5345 3.9638 35 1 2.6866 1.4046 5.6123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063084893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:29 Heat of formation + Delta-G solvation = -72.492827 kcal Electronic energy + Delta-G solvation = -20321.196553 eV Core-core repulsion = 17039.774611 eV Total energy + Delta-G solvation = -3281.421942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.65960 -41.40375 -39.31149 -37.22042 -35.36957 -34.74961 -32.65705 -30.85204 -29.25654 -27.72327 -27.30085 -25.24404 -23.53587 -22.51661 -20.46824 -18.70068 -18.48926 -18.11677 -18.05901 -17.50835 -16.86163 -16.43782 -16.11994 -15.98539 -15.80306 -15.05668 -14.72421 -14.42377 -14.18178 -13.84477 -13.80623 -13.53119 -13.43672 -13.07819 -12.95062 -12.72417 -12.64899 -12.31064 -12.17883 -12.14139 -11.39436 -11.21034 -10.77797 -10.51687 -10.06355 -9.38616 -8.47827 -8.15681 -6.32575 -0.03914 0.40017 1.41175 1.43212 1.50610 1.77639 2.27695 2.46157 2.70584 2.90667 3.11897 3.40482 3.64838 3.81161 4.10644 4.33337 4.38276 4.60231 4.63881 4.73538 4.86642 4.90046 4.97474 5.02988 5.10204 5.13776 5.23251 5.43717 5.60062 5.64387 5.82328 6.00739 6.13763 6.38794 6.72453 6.74119 6.90445 7.25080 7.42579 8.88115 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.005737 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.049807 B = 4879.840891 C = 5618.263494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.590 5.590 13 C 0.087 3.913 14 C 0.549 3.451 15 O -0.597 6.597 16 C -0.207 4.207 17 C -0.076 4.076 18 C 0.015 3.985 19 F -0.150 7.150 20 C -0.068 4.068 21 C -0.168 4.168 22 C 0.252 3.748 23 N -0.854 5.854 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.401 0.599 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -6.801 17.307 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.032 0.968 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.319 5.319 13 C -0.055 4.055 14 C 0.339 3.661 15 O -0.480 6.480 16 C -0.215 4.215 17 C -0.096 4.096 18 C -0.006 4.006 19 F -0.129 7.129 20 C -0.087 4.087 21 C -0.190 4.190 22 C 0.141 3.859 23 N -0.392 5.392 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.232 0.768 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.102 -6.128 17.051 18.382 hybrid contribution 0.138 0.054 -1.444 1.451 sum 3.240 -6.073 15.607 17.058 Atomic orbital electron populations 1.21881 0.96997 1.00117 1.00095 1.18592 0.91801 0.92294 0.81269 0.96830 1.21538 1.32140 1.13155 0.91195 0.92330 1.25700 0.95014 0.95617 1.01889 1.70004 1.37128 1.23724 1.24545 0.85531 0.78372 0.79013 0.78236 1.18789 1.20722 1.20394 1.48153 1.48258 1.13232 1.22231 1.21836 1.01380 0.80724 1.01599 1.18632 0.78474 0.86365 0.82622 1.90658 1.63335 1.17100 1.76933 1.19073 1.11742 0.97812 0.92902 1.21075 0.96286 0.92882 0.99374 1.17326 1.04446 0.84040 0.94819 1.91456 1.82654 1.42682 1.96123 1.21330 0.96765 0.95169 0.95475 1.20760 1.03759 0.95823 0.98664 1.17945 0.89807 0.86321 0.91813 1.42673 1.64708 1.18542 1.13313 0.95955 0.91192 0.93494 0.92557 0.92582 0.90706 0.90129 0.85159 0.81121 0.80890 0.76821 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.96 71.98 0.64 -5.77 16 2 C 0.26 13.78 2.62 44.24 0.12 13.90 16 3 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 4 C -0.54 -29.80 8.37 25.60 0.21 -29.58 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 9 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.59 -25.81 2.75 -830.67 -2.29 -28.10 16 13 C 0.09 3.00 8.23 127.77 1.05 4.05 16 14 C 0.55 23.58 6.80 86.66 0.59 24.17 16 15 O -0.60 -29.84 14.56 -4.03 -0.06 -29.89 16 16 C -0.21 -6.84 4.85 -19.98 -0.10 -6.94 16 17 C -0.08 -2.28 7.99 22.57 0.18 -2.10 16 18 C 0.01 0.37 7.28 22.33 0.16 0.53 16 19 F -0.15 -3.89 17.26 44.97 0.78 -3.12 16 20 C -0.07 -1.25 10.00 22.33 0.22 -1.02 16 21 C -0.17 -3.04 9.88 22.37 0.22 -2.82 16 22 C 0.25 6.61 6.74 38.68 0.26 6.87 16 23 N -0.85 -20.59 8.92 -50.91 -0.45 -21.04 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 26 H 0.05 2.07 6.67 -2.39 -0.02 2.05 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.06 1.83 6.75 -2.39 -0.02 1.82 16 29 H 0.07 2.57 6.44 -2.39 -0.02 2.55 16 30 H 0.08 2.33 6.82 -2.39 -0.02 2.31 16 31 H 0.13 4.08 6.28 -2.91 -0.02 4.06 16 32 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.40 12.26 6.48 -92.70 -0.60 11.66 16 35 H 0.41 6.47 8.84 -92.71 -0.82 5.65 16 Total: -1.00 -68.47 294.16 3.99 -64.48 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.27 Total: 22.04 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.02 Total: 2.71 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -2.50 Total: -101.63 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.06 Total: -29.89 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.47 3.99 -64.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.014 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds