Wall clock time and date at job start Mon Mar 30 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46823 * 2 1 4 4 C 1.50696 * 109.47390 * 119.99849 * 2 1 3 5 5 H 1.07997 * 120.00491 * 120.00029 * 4 2 1 6 6 C 1.37887 * 120.00182 * 300.00558 * 4 2 1 7 7 N 1.31509 * 119.99607 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99898 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47128 * 89.99871 * 8 6 4 10 10 H 1.48503 * 109.47020 * 209.99464 * 8 6 4 11 11 H 1.48493 * 109.47419 * 329.99308 * 8 6 4 12 12 N 1.46495 * 109.47334 * 240.00216 * 2 1 3 13 13 C 1.46506 * 119.99835 * 299.99912 * 12 2 1 14 14 C 1.34773 * 120.00160 * 119.99824 * 12 2 1 15 15 O 1.21595 * 120.00345 * 6.93995 * 14 12 2 16 16 C 1.47531 * 119.99628 * 186.94124 * 14 12 2 17 17 C 1.39769 * 120.06591 * 20.46065 * 16 14 12 18 18 C 1.37648 * 119.96863 * 179.69629 * 17 16 14 19 19 C 1.39150 * 120.09632 * 0.59862 * 18 17 16 20 20 N 1.39190 * 119.93435 * 179.69798 * 19 18 17 21 21 C 1.39376 * 120.12412 * 359.67652 * 19 18 17 22 22 F 1.35098 * 119.98196 * 180.02562 * 21 19 18 23 23 C 1.37798 * 120.03187 * 0.02562 * 21 19 18 24 24 H 1.09002 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47605 * 59.99865 * 1 2 3 26 26 H 1.09012 * 109.47206 * 299.99876 * 1 2 3 27 27 H 0.97000 * 119.99741 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47305 * 86.54274 * 13 12 2 29 29 H 1.08998 * 109.47253 * 206.54394 * 13 12 2 30 30 H 1.09003 * 109.46837 * 326.54474 * 13 12 2 31 31 H 1.08000 * 120.01879 * 359.96854 * 17 16 14 32 32 H 1.08000 * 119.95256 * 180.29398 * 18 17 16 33 33 H 0.97000 * 119.99337 * 179.97438 * 20 19 18 34 34 H 0.96995 * 120.00571 * 359.97438 * 20 19 18 35 35 H 1.08003 * 120.04415 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6905 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0355 -2.0833 15 8 3.1912 1.0855 -1.8316 16 6 3.1583 -0.6788 -3.3598 17 6 2.3958 -1.7420 -3.8514 18 6 2.7347 -2.3366 -5.0457 19 6 3.8428 -1.8889 -5.7585 20 7 4.1860 -2.4967 -6.9627 21 6 4.6093 -0.8327 -5.2690 22 9 5.6842 -0.4000 -5.9636 23 6 4.2712 -0.2297 -4.0770 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5139 0.8901 27 1 0.7094 1.1617 3.4844 28 1 0.7066 -2.1455 -1.9456 29 1 2.4337 -2.5658 -2.0386 30 1 1.5896 -2.6118 -0.4722 31 1 1.5386 -2.0940 -3.2968 32 1 2.1425 -3.1550 -5.4278 33 1 4.9581 -2.1851 -7.4604 34 1 3.6533 -3.2318 -7.3041 35 1 4.8648 0.5890 -3.6978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063084912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:21 Heat of formation + Delta-G solvation = -32.775195 kcal Electronic energy + Delta-G solvation = -20014.365662 eV Core-core repulsion = 16734.666005 eV Total energy + Delta-G solvation = -3279.699656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.78153 -39.93870 -38.13041 -35.40669 -34.72035 -32.87339 -30.69748 -29.86098 -28.19894 -26.43568 -25.20630 -23.44549 -22.61134 -21.03002 -18.99205 -17.54981 -17.33357 -17.19850 -16.32571 -15.64047 -15.45737 -15.24088 -15.12932 -14.51159 -14.28855 -13.84746 -13.30758 -12.96990 -12.80418 -12.65924 -12.47151 -12.16190 -11.65061 -11.45294 -11.04682 -11.01851 -10.80409 -10.61393 -10.48544 -10.22885 -10.13559 -9.18449 -8.98940 -8.83100 -8.40890 -7.72428 -7.51532 -6.05435 -4.13086 1.11037 1.25292 3.25022 3.29099 3.35666 3.37241 3.53750 3.86286 4.11996 4.27090 4.42047 4.76677 4.99998 5.15361 5.26104 5.32028 5.57942 5.72373 5.90481 5.93721 6.06853 6.12633 6.37375 6.44397 6.67572 6.76504 6.84876 7.07026 7.17674 7.41025 7.44225 7.55668 7.73285 8.03313 8.21668 8.53016 8.85357 9.06800 9.53170 10.99992 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.004530 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.835803 B = 6179.661047 C = 6299.326120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.586 5.586 13 C 0.071 3.929 14 C 0.549 3.451 15 O -0.549 6.549 16 C -0.153 4.153 17 C -0.066 4.066 18 C -0.188 4.188 19 C 0.204 3.796 20 N -0.870 5.870 21 C 0.002 3.998 22 F -0.145 7.145 23 C -0.048 4.048 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.401 0.599 34 H 0.402 0.598 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -9.169 -16.357 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.072 4.072 14 C 0.337 3.663 15 O -0.429 6.429 16 C -0.159 4.159 17 C -0.085 4.085 18 C -0.211 4.211 19 C 0.097 3.903 20 N -0.409 5.409 21 C -0.022 4.022 22 F -0.124 7.124 23 C -0.069 4.069 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.176 0.824 32 H 0.151 0.849 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.282 -8.430 -16.029 18.254 hybrid contribution 0.596 -0.657 0.361 0.958 sum 2.879 -9.088 -15.668 18.340 Atomic orbital electron populations 1.22093 0.98066 0.99450 1.00881 1.18969 0.90822 0.94579 0.79886 0.91795 1.21314 1.31740 1.13036 0.90272 0.92190 1.24889 0.94927 0.94996 0.98952 1.69877 1.36371 1.22623 1.23740 0.86491 0.78652 0.79849 0.82362 1.20615 1.21161 1.19933 1.48094 1.48755 1.11319 1.23497 1.22182 0.98480 0.83869 1.02692 1.18041 0.79294 0.85813 0.83168 1.90736 1.54378 1.19773 1.78029 1.19800 0.98428 0.99795 0.97867 1.22219 0.99405 0.92729 0.94164 1.20446 0.98633 1.04859 0.97160 1.17901 0.93583 0.91375 0.87397 1.42257 1.35436 1.40412 1.22766 1.16918 0.89999 1.00305 0.94946 1.91427 1.53102 1.89305 1.78587 1.21026 0.96049 0.98260 0.91529 0.95107 0.96952 0.88768 0.92697 0.93262 0.91294 0.90209 0.82372 0.84929 0.77005 0.76905 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.15 0.33 -3.13 16 2 C 0.26 6.59 2.63 -69.09 -0.18 6.41 16 3 H 0.06 1.90 6.92 -51.93 -0.36 1.55 16 4 C -0.52 -14.18 8.02 -34.44 -0.28 -14.46 16 5 H 0.06 1.59 7.28 -52.49 -0.38 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.59 2.75 -176.50 -0.49 -13.07 16 13 C 0.07 1.16 7.67 59.85 0.46 1.62 16 14 C 0.55 11.87 7.51 -12.47 -0.09 11.77 16 15 O -0.55 -14.08 15.88 5.28 0.08 -13.99 16 16 C -0.15 -2.59 5.57 -104.95 -0.58 -3.17 16 17 C -0.07 -0.88 7.60 -39.22 -0.30 -1.17 16 18 C -0.19 -2.03 9.87 -39.46 -0.39 -2.42 16 19 C 0.20 2.33 6.76 -83.76 -0.57 1.76 16 20 N -0.87 -6.84 9.06 32.45 0.29 -6.55 16 21 C 0.00 0.03 7.30 -39.32 -0.29 -0.26 16 22 F -0.15 -1.98 16.62 2.25 0.04 -1.94 16 23 C -0.05 -0.77 9.55 -39.16 -0.37 -1.15 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.45 6.07 -51.92 -0.32 2.14 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 29 H 0.07 0.96 5.27 -51.93 -0.27 0.68 16 30 H 0.08 1.39 6.98 -51.93 -0.36 1.02 16 31 H 0.16 1.88 4.02 -52.49 -0.21 1.67 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.40 2.86 8.29 -40.82 -0.34 2.52 16 34 H 0.40 2.10 8.83 -40.82 -0.36 1.74 16 35 H 0.14 2.39 7.78 -52.48 -0.41 1.98 16 LS Contribution 293.83 15.07 4.43 4.43 Total: -1.00 -32.02 293.83 -6.14 -38.16 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.75 Total: 3.97 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.35 Total: -2.54 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.44 Total: -44.10 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.02 -6.14 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.381 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds