Wall clock time and date at job start Mon Mar 30 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46823 * 2 1 4 4 C 1.50696 * 109.47390 * 119.99849 * 2 1 3 5 5 H 1.07997 * 120.00491 * 120.00029 * 4 2 1 6 6 C 1.37887 * 120.00182 * 300.00558 * 4 2 1 7 7 N 1.31509 * 119.99607 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99898 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47128 * 89.99871 * 8 6 4 10 10 H 1.48503 * 109.47020 * 209.99464 * 8 6 4 11 11 H 1.48493 * 109.47419 * 329.99308 * 8 6 4 12 12 N 1.46495 * 109.47334 * 240.00216 * 2 1 3 13 13 C 1.46506 * 119.99835 * 299.99912 * 12 2 1 14 14 C 1.34773 * 120.00160 * 119.99824 * 12 2 1 15 15 O 1.21595 * 120.00345 * 6.93995 * 14 12 2 16 16 C 1.47531 * 119.99628 * 186.94124 * 14 12 2 17 17 C 1.39769 * 120.06591 * 20.46065 * 16 14 12 18 18 C 1.37648 * 119.96863 * 179.69629 * 17 16 14 19 19 C 1.39150 * 120.09632 * 0.59862 * 18 17 16 20 20 N 1.39190 * 119.93435 * 179.69798 * 19 18 17 21 21 C 1.39376 * 120.12412 * 359.67652 * 19 18 17 22 22 F 1.35098 * 119.98196 * 180.02562 * 21 19 18 23 23 C 1.37798 * 120.03187 * 0.02562 * 21 19 18 24 24 H 1.09002 * 109.47295 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47605 * 59.99865 * 1 2 3 26 26 H 1.09012 * 109.47206 * 299.99876 * 1 2 3 27 27 H 0.97000 * 119.99741 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47305 * 86.54274 * 13 12 2 29 29 H 1.08998 * 109.47253 * 206.54394 * 13 12 2 30 30 H 1.09003 * 109.46837 * 326.54474 * 13 12 2 31 31 H 1.08000 * 120.01879 * 359.96854 * 17 16 14 32 32 H 1.08000 * 119.95256 * 180.29398 * 18 17 16 33 33 H 0.97000 * 119.99337 * 179.97438 * 20 19 18 34 34 H 0.96995 * 120.00571 * 359.97438 * 20 19 18 35 35 H 1.08003 * 120.04415 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6905 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0355 -2.0833 15 8 3.1912 1.0855 -1.8316 16 6 3.1583 -0.6788 -3.3598 17 6 2.3958 -1.7420 -3.8514 18 6 2.7347 -2.3366 -5.0457 19 6 3.8428 -1.8889 -5.7585 20 7 4.1860 -2.4967 -6.9627 21 6 4.6093 -0.8327 -5.2690 22 9 5.6842 -0.4000 -5.9636 23 6 4.2712 -0.2297 -4.0770 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5139 0.8901 27 1 0.7094 1.1617 3.4844 28 1 0.7066 -2.1455 -1.9456 29 1 2.4337 -2.5658 -2.0386 30 1 1.5896 -2.6118 -0.4722 31 1 1.5386 -2.0940 -3.2968 32 1 2.1425 -3.1550 -5.4278 33 1 4.9581 -2.1851 -7.4604 34 1 3.6533 -3.2318 -7.3041 35 1 4.8648 0.5890 -3.6978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063084912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:20 Heat of formation + Delta-G solvation = -55.176023 kcal Electronic energy + Delta-G solvation = -20015.337034 eV Core-core repulsion = 16734.666005 eV Total energy + Delta-G solvation = -3280.671029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.84087 -41.31627 -39.41945 -37.19823 -35.78502 -34.70788 -32.03897 -31.30606 -29.47683 -27.87268 -27.27822 -24.74079 -23.69121 -22.59947 -20.56046 -18.79573 -18.50318 -18.36406 -17.99152 -17.22642 -16.73989 -16.54549 -16.26190 -16.08735 -15.90204 -14.85475 -14.83247 -14.46765 -14.16494 -14.01517 -13.73869 -13.65111 -13.37963 -12.95857 -12.77695 -12.72151 -12.58469 -12.19189 -12.08269 -11.91869 -11.60171 -11.16994 -10.71166 -10.48477 -9.87543 -9.34283 -8.56436 -8.12547 -6.28995 -0.02089 0.21536 1.42636 1.44611 1.54208 1.91787 2.29635 2.49230 2.76341 2.81260 3.15551 3.24936 3.69286 3.76300 4.12572 4.25894 4.44468 4.61731 4.68186 4.76563 4.89294 4.95677 5.03516 5.06287 5.10681 5.13649 5.37408 5.51100 5.62884 5.69393 5.71360 6.07353 6.18838 6.34652 6.78553 6.82869 6.84049 7.32455 7.48561 8.91824 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.004530 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.835803 B = 6179.661047 C = 6299.326120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.285 1.285 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.593 5.593 13 C 0.065 3.935 14 C 0.539 3.461 15 O -0.611 6.611 16 C -0.182 4.182 17 C -0.054 4.054 18 C -0.173 4.173 19 C 0.224 3.776 20 N -0.848 5.848 21 C -0.013 4.013 22 F -0.147 7.147 23 C -0.063 4.063 24 H 0.052 0.948 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.264 0.736 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.408 0.592 34 H 0.420 0.580 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -12.874 -18.433 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.204 1.204 11 H -0.184 1.184 12 N -0.322 5.322 13 C -0.076 4.076 14 C 0.330 3.670 15 O -0.495 6.495 16 C -0.188 4.188 17 C -0.073 4.073 18 C -0.195 4.195 19 C 0.114 3.886 20 N -0.387 5.387 21 C -0.036 4.036 22 F -0.126 7.126 23 C -0.083 4.083 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.238 0.762 34 H 0.253 0.747 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.684 -12.214 -18.171 21.959 hybrid contribution 0.835 0.467 0.831 1.268 sum 2.519 -11.746 -17.340 21.095 Atomic orbital electron populations 1.21861 0.96540 1.00479 1.00042 1.18584 0.91919 0.92105 0.81618 0.97650 1.21575 1.31828 1.13100 0.91145 0.92091 1.25735 0.95054 0.95666 1.02005 1.70024 1.37331 1.23900 1.24406 0.85454 0.77666 0.79301 0.78575 1.21142 1.20436 1.18362 1.48064 1.48666 1.13262 1.22181 1.22528 1.01195 0.80654 1.03196 1.18852 0.78264 0.85275 0.84627 1.90683 1.56689 1.22556 1.79602 1.19375 1.00609 1.02416 0.96405 1.22334 0.98878 0.91094 0.95013 1.20854 0.98067 1.04996 0.95580 1.18003 0.92699 0.89840 0.88058 1.42310 1.35387 1.39895 1.21092 1.16920 0.90711 1.01440 0.94575 1.91417 1.53310 1.89534 1.78388 1.20878 0.96257 0.98360 0.92854 0.92905 0.95925 0.91423 0.92652 0.89775 0.88414 0.91250 0.80715 0.80230 0.76244 0.74723 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.97 71.98 0.65 -5.64 16 2 C 0.26 13.84 2.63 44.24 0.12 13.96 16 3 H 0.01 0.35 6.92 -2.39 -0.02 0.34 16 4 C -0.54 -29.73 8.02 25.60 0.21 -29.52 16 5 H 0.06 3.27 7.28 -2.91 -0.02 3.25 16 6 C 0.01 0.83 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.28 16 8 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 N -0.59 -25.89 2.75 -830.58 -2.29 -28.17 16 13 C 0.07 2.00 7.67 127.77 0.98 2.98 16 14 C 0.54 24.39 7.51 86.69 0.65 25.04 16 15 O -0.61 -34.03 15.88 -4.01 -0.06 -34.09 16 16 C -0.18 -6.15 5.57 -20.08 -0.11 -6.27 16 17 C -0.05 -1.26 7.60 22.50 0.17 -1.09 16 18 C -0.17 -2.82 9.87 22.35 0.22 -2.60 16 19 C 0.22 4.21 6.76 38.47 0.26 4.47 16 20 N -0.85 -9.16 9.06 -51.24 -0.46 -9.63 16 21 C -0.01 -0.33 7.30 22.44 0.16 -0.17 16 22 F -0.15 -3.88 16.62 44.97 0.75 -3.14 16 23 C -0.06 -2.07 9.55 22.55 0.22 -1.85 16 24 H 0.05 2.25 7.67 -2.39 -0.02 2.23 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 3.63 6.07 -2.38 -0.01 3.61 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.08 1.99 6.98 -2.39 -0.02 1.98 16 29 H 0.10 2.41 5.27 -2.39 -0.01 2.40 16 30 H 0.07 2.28 6.98 -2.39 -0.02 2.26 16 31 H 0.18 3.39 4.02 -2.91 -0.01 3.38 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.41 4.07 8.29 -92.71 -0.77 3.31 16 34 H 0.42 1.88 8.83 -92.71 -0.82 1.06 16 35 H 0.12 4.37 7.78 -2.91 -0.02 4.34 16 Total: -1.00 -75.76 293.83 3.74 -72.02 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -0.43 Total: 10.21 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 3.97 Total: 0.58 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.51 Total: -91.09 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.06 Total: -34.09 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.14 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.76 3.74 -72.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.845 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds