Wall clock time and date at job start Mon Mar 30 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47452 * 2 1 4 4 C 1.50708 * 109.46876 * 240.00328 * 2 1 3 5 5 H 1.08001 * 119.99845 * 239.99819 * 4 2 1 6 6 C 1.37880 * 120.00102 * 60.00330 * 4 2 1 7 7 N 1.31511 * 119.99498 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00001 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47198 * 59.99837 * 8 6 4 10 10 H 1.48497 * 109.47348 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47227 * 300.00121 * 8 6 4 12 12 N 1.46498 * 109.47384 * 120.00437 * 2 1 3 13 13 C 1.46509 * 119.99745 * 59.99781 * 12 2 1 14 14 C 1.34776 * 120.00142 * 240.00155 * 12 2 1 15 15 O 1.21591 * 119.99824 * 4.34282 * 14 12 2 16 16 C 1.47517 * 119.99781 * 184.34434 * 14 12 2 17 17 C 1.39773 * 120.06657 * 327.80331 * 16 14 12 18 18 C 1.37651 * 119.96890 * 179.97438 * 17 16 14 19 19 C 1.39139 * 120.10053 * 359.72004 * 18 17 16 20 20 N 1.39190 * 119.94190 * 180.29686 * 19 18 17 21 21 C 1.39382 * 120.12337 * 0.55528 * 19 18 17 22 22 F 1.35102 * 119.98655 * 179.71939 * 21 19 18 23 23 C 1.37795 * 120.03136 * 359.44675 * 21 19 18 24 24 H 1.09004 * 109.47303 * 59.99585 * 1 2 3 25 25 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47044 * 299.99775 * 1 2 3 27 27 H 0.97004 * 119.99605 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46715 * 274.73099 * 13 12 2 29 29 H 1.08997 * 109.47093 * 34.73134 * 13 12 2 30 30 H 1.08999 * 109.46638 * 154.73632 * 13 12 2 31 31 H 1.07996 * 120.01459 * 359.97438 * 17 16 14 32 32 H 1.07998 * 119.95160 * 180.02562 * 18 17 16 33 33 H 0.97006 * 119.99965 * 180.25254 * 20 19 18 34 34 H 0.97005 * 119.99740 * 0.25844 * 20 19 18 35 35 H 1.08002 * 120.05087 * 180.29700 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.8278 -2.5196 -4.0084 10 1 1.8268 -0.4196 -5.2205 11 1 3.8073 -1.1188 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0934 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0219 1.1489 1.9325 16 6 3.3638 -0.7562 3.2372 17 6 2.6615 -1.8160 3.8180 18 6 3.1960 -2.4872 4.8943 19 6 4.4373 -2.1162 5.4017 20 7 4.9775 -2.8012 6.4863 21 6 5.1385 -1.0563 4.8293 22 9 6.3410 -0.6947 5.3277 23 6 4.6084 -0.3806 3.7517 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7087 1.1615 -3.4843 28 1 0.6959 -2.1462 1.9253 29 1 1.6117 -2.6172 0.4734 30 1 2.4221 -2.5600 2.0572 31 1 1.6999 -2.1081 3.4225 32 1 2.6533 -3.3063 5.3426 33 1 5.8412 -2.5408 6.8430 34 1 4.4903 -3.5390 6.8854 35 1 5.1537 0.4376 3.3048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063084913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:23 Heat of formation + Delta-G solvation = -59.429926 kcal Electronic energy + Delta-G solvation = -20020.663679 eV Core-core repulsion = 16739.808187 eV Total energy + Delta-G solvation = -3280.855492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84272 -41.30810 -39.43590 -37.17736 -35.77954 -34.69873 -32.02159 -31.34501 -29.49298 -27.79322 -27.28567 -24.74890 -23.73240 -22.61907 -20.55111 -18.78720 -18.50017 -18.33430 -18.01704 -17.25499 -16.78174 -16.57234 -16.23825 -16.07723 -15.87812 -14.91819 -14.84101 -14.46908 -14.08034 -14.05927 -13.75733 -13.61007 -13.37824 -12.96746 -12.77067 -12.71656 -12.61529 -12.19856 -12.10884 -12.03579 -11.61280 -11.19324 -10.71351 -10.48024 -9.87395 -9.34546 -8.55907 -8.13028 -6.29927 0.01047 0.20148 1.42820 1.45625 1.52920 1.87659 2.29260 2.48457 2.74799 2.79207 3.14894 3.24865 3.68404 3.75749 4.11203 4.25502 4.45678 4.60597 4.70826 4.77001 4.88338 4.94546 5.03297 5.05196 5.09247 5.13339 5.36800 5.50130 5.61361 5.68427 5.69777 6.06473 6.17480 6.34937 6.77356 6.81979 6.84550 7.31221 7.47463 8.91298 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.004636 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.833605 B = 6038.251394 C = 6118.738449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.591 5.591 13 C 0.062 3.938 14 C 0.540 3.460 15 O -0.611 6.611 16 C -0.179 4.179 17 C -0.048 4.048 18 C -0.170 4.170 19 C 0.223 3.777 20 N -0.848 5.848 21 C -0.010 4.010 22 F -0.147 7.147 23 C -0.066 4.066 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.020 0.980 27 H 0.265 0.735 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.408 0.592 34 H 0.420 0.580 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -13.477 17.596 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.024 0.976 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.205 1.205 12 N -0.320 5.320 13 C -0.080 4.080 14 C 0.330 3.670 15 O -0.495 6.495 16 C -0.185 4.185 17 C -0.067 4.067 18 C -0.193 4.193 19 C 0.113 3.887 20 N -0.387 5.387 21 C -0.034 4.034 22 F -0.126 7.126 23 C -0.086 4.086 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.238 0.762 34 H 0.253 0.747 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.500 -12.780 17.373 21.850 hybrid contribution 0.814 0.425 -0.924 1.302 sum 4.314 -12.355 16.449 21.020 Atomic orbital electron populations 1.21855 0.96750 1.00347 0.99964 1.18582 0.91961 0.92140 0.81509 0.97584 1.21543 1.32039 1.13186 0.91065 0.91996 1.25743 0.95030 0.95636 1.02023 1.70025 1.37230 1.23863 1.24505 0.85493 0.78282 0.79098 0.78035 1.18423 1.20908 1.20478 1.48099 1.48490 1.13405 1.21986 1.22543 1.01365 0.80721 1.03347 1.18841 0.78612 0.86328 0.83183 1.90686 1.63123 1.18010 1.77656 1.19353 0.97493 1.01930 0.99725 1.21927 1.00522 0.90836 0.93393 1.20825 0.94521 1.04856 0.99092 1.17969 0.92666 0.89477 0.88613 1.42303 1.25156 1.38210 1.33064 1.16912 0.84963 1.01538 1.00025 1.91419 1.42619 1.91654 1.86938 1.20837 0.95147 0.98308 0.94318 0.91402 0.93032 0.96112 0.92620 0.90268 0.91366 0.87948 0.81406 0.80169 0.76244 0.74726 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.97 71.98 0.65 -5.73 16 2 C 0.26 13.93 2.63 44.25 0.12 14.05 16 3 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 4 C -0.54 -29.80 8.03 25.60 0.21 -29.59 16 5 H 0.06 3.30 7.26 -2.91 -0.02 3.28 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.59 -25.97 2.75 -830.57 -2.29 -28.26 16 13 C 0.06 1.91 7.83 127.77 1.00 2.91 16 14 C 0.54 24.44 7.42 86.69 0.64 25.08 16 15 O -0.61 -33.89 16.09 -4.00 -0.06 -33.96 16 16 C -0.18 -6.06 5.47 -20.08 -0.11 -6.17 16 17 C -0.05 -1.10 7.41 22.50 0.17 -0.93 16 18 C -0.17 -2.78 9.87 22.35 0.22 -2.56 16 19 C 0.22 4.19 6.76 38.47 0.26 4.45 16 20 N -0.85 -9.19 9.06 -51.24 -0.46 -9.66 16 21 C -0.01 -0.28 7.30 22.44 0.16 -0.11 16 22 F -0.15 -3.90 16.62 44.97 0.75 -3.15 16 23 C -0.07 -2.16 9.56 22.55 0.22 -1.95 16 24 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 25 H 0.05 2.23 7.67 -2.39 -0.02 2.22 16 26 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.08 1.97 7.44 -2.38 -0.02 1.95 16 29 H 0.07 2.27 6.97 -2.39 -0.02 2.25 16 30 H 0.10 2.54 4.71 -2.39 -0.01 2.53 16 31 H 0.17 3.22 4.82 -2.91 -0.01 3.20 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.41 4.10 8.29 -92.70 -0.77 3.33 16 34 H 0.42 1.88 8.83 -92.70 -0.82 1.06 16 35 H 0.12 4.32 7.95 -2.91 -0.02 4.30 16 Total: -1.00 -75.54 294.69 3.75 -71.79 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -0.43 Total: 10.43 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 3.98 Total: 0.74 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -2.51 Total: -91.23 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.06 Total: -33.96 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.75 Total: -3.15 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.54 3.75 -71.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063084913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.360 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds