Wall clock time and date at job start Mon Mar 30 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47178 * 2 1 4 4 C 1.50695 * 109.47137 * 120.00584 * 2 1 3 5 5 H 1.08006 * 120.00142 * 120.00145 * 4 2 1 6 6 C 1.37877 * 120.00060 * 299.99455 * 4 2 1 7 7 N 1.31513 * 119.99675 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00217 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46856 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47007 * 120.00280 * 8 6 4 11 11 H 1.48490 * 109.47238 * 240.00167 * 8 6 4 12 12 N 1.46507 * 109.46648 * 240.00293 * 2 1 3 13 13 C 1.46497 * 120.00172 * 299.99873 * 12 2 1 14 14 C 1.34775 * 119.99789 * 120.00010 * 12 2 1 15 15 O 1.21620 * 120.00078 * 4.44253 * 14 12 2 16 16 C 1.47364 * 120.00211 * 184.44253 * 14 12 2 17 17 C 1.39863 * 120.09239 * 310.78731 * 16 14 12 18 18 C 1.36526 * 120.07977 * 180.02562 * 17 16 14 19 19 C 1.39296 * 120.27380 * 359.97438 * 18 17 16 20 20 N 1.39045 * 119.91261 * 180.02562 * 19 18 17 21 21 C 1.39085 * 120.17975 * 359.76268 * 19 18 17 22 22 C 1.38001 * 119.91573 * 0.51199 * 21 19 18 23 23 F 1.35102 * 120.13214 * 179.74434 * 22 21 19 24 24 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46836 * 299.99410 * 1 2 3 26 26 H 1.09000 * 109.47424 * 59.99464 * 1 2 3 27 27 H 0.97005 * 119.99962 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46809 * 273.10740 * 13 12 2 29 29 H 1.08996 * 109.47440 * 33.10456 * 13 12 2 30 30 H 1.09003 * 109.47262 * 153.10768 * 13 12 2 31 31 H 1.08002 * 119.95481 * 0.04642 * 17 16 14 32 32 H 1.08002 * 119.86280 * 180.02562 * 18 17 16 33 33 H 0.97005 * 120.00082 * 359.97438 * 20 19 18 34 34 H 0.96996 * 120.00281 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.03929 * 180.26469 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1484 -2.2859 3.6035 10 1 3.1474 -0.1861 4.8159 11 1 1.1680 -1.5869 4.8163 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7931 -0.0356 -2.0834 15 8 3.1537 1.1026 -1.8519 16 6 3.2033 -0.6984 -3.3340 17 6 3.7505 -1.9851 -3.2989 18 6 4.1309 -2.5987 -4.4576 19 6 3.9764 -1.9488 -5.6800 20 7 4.3660 -2.5810 -6.8555 21 6 3.4285 -0.6713 -5.7283 22 6 3.0466 -0.0417 -4.5612 23 9 2.5187 1.2013 -4.6026 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7083 1.1607 3.4844 28 1 2.3853 -2.7377 -0.9253 29 1 0.6669 -2.2863 -1.0333 30 1 1.6776 -2.2990 -2.4985 31 1 3.8718 -2.4939 -2.3540 32 1 4.5526 -3.5925 -4.4265 33 1 4.7451 -3.4734 -6.8237 34 1 4.2593 -2.1295 -7.7073 35 1 3.3059 -0.1713 -6.6776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:26 Heat of formation + Delta-G solvation = -72.852723 kcal Electronic energy + Delta-G solvation = -20218.776661 eV Core-core repulsion = 16937.339113 eV Total energy + Delta-G solvation = -3281.437548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.96282 -41.13808 -39.64720 -37.13730 -35.61158 -34.62064 -31.92447 -31.39594 -29.63010 -27.67504 -27.29182 -24.56719 -23.89124 -22.60024 -20.44167 -18.78030 -18.58792 -18.41228 -17.88565 -17.33923 -16.75027 -16.37320 -16.29681 -16.10047 -15.79637 -15.25480 -14.78159 -14.43627 -14.05366 -14.00437 -13.88692 -13.47538 -13.35179 -13.03954 -12.93470 -12.70503 -12.63736 -12.30139 -12.16231 -12.09747 -11.47642 -11.16916 -10.74250 -10.50679 -9.89733 -9.36312 -8.58066 -8.13084 -6.30528 0.06910 0.28617 1.42211 1.43976 1.55757 1.83348 2.30097 2.48878 2.71536 2.79480 3.14432 3.38890 3.71232 3.80435 4.12297 4.35815 4.42956 4.58429 4.67866 4.75129 4.86362 4.94662 5.00302 5.03192 5.09454 5.17299 5.34926 5.46014 5.60703 5.67376 5.72728 6.02839 6.15537 6.44880 6.76758 6.79062 6.95707 7.30000 7.46335 8.91722 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.005101 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.435413 B = 5488.193825 C = 5955.278394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.541 3.459 15 O -0.607 6.607 16 C -0.246 4.246 17 C -0.010 4.010 18 C -0.199 4.199 19 C 0.276 3.724 20 N -0.843 5.843 21 C -0.245 4.245 22 C 0.165 3.835 23 F -0.151 7.151 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.417 0.583 34 H 0.412 0.588 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -13.757 -18.984 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.060 4.060 14 C 0.331 3.669 15 O -0.490 6.490 16 C -0.252 4.252 17 C -0.029 4.029 18 C -0.221 4.221 19 C 0.165 3.835 20 N -0.380 5.380 21 C -0.269 4.269 22 C 0.144 3.856 23 F -0.129 7.129 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.204 -13.058 -18.723 23.413 hybrid contribution 0.010 0.623 0.926 1.116 sum 5.214 -12.435 -17.797 22.329 Atomic orbital electron populations 1.21883 0.97017 1.00309 0.99846 1.18595 0.91712 0.92158 0.81806 0.97775 1.21584 1.31890 1.13055 0.90884 0.91777 1.25805 0.95053 0.95655 1.02197 1.70047 1.37427 1.24047 1.24386 0.85326 0.78207 0.78449 0.78529 1.18578 1.21288 1.19855 1.48144 1.48286 1.13532 1.22179 1.21972 1.01711 0.80284 1.02032 1.18796 0.78418 0.85364 0.84325 1.90704 1.58005 1.21439 1.78891 1.19664 1.15171 0.99255 0.91138 1.20845 0.91635 0.90050 1.00413 1.20631 1.08889 1.03112 0.89490 1.17565 0.88104 0.89442 0.88402 1.42388 1.69241 1.21136 1.05279 1.20478 1.11954 0.97383 0.97056 1.17707 0.94857 0.79160 0.93880 1.91476 1.83854 1.40259 1.97321 0.92961 0.91116 0.96584 0.92645 0.91659 0.91153 0.89208 0.83738 0.81183 0.75090 0.75701 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 8.94 71.98 0.64 -6.13 16 2 C 0.26 14.45 2.63 44.24 0.12 14.57 16 3 H 0.00 0.29 6.91 -2.39 -0.02 0.27 16 4 C -0.54 -30.20 8.37 25.60 0.21 -29.98 16 5 H 0.06 3.47 7.56 -2.91 -0.02 3.44 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.75 11.32 21.45 0.24 -54.51 16 8 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 9 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 N -0.59 -27.62 2.75 -830.75 -2.29 -29.91 16 13 C 0.08 2.78 8.35 127.77 1.07 3.85 16 14 C 0.54 26.08 6.99 86.65 0.61 26.69 16 15 O -0.61 -35.81 15.99 -4.09 -0.07 -35.88 16 16 C -0.25 -8.82 4.90 -20.04 -0.10 -8.92 16 17 C -0.01 -0.25 7.55 22.26 0.17 -0.09 16 18 C -0.20 -3.36 9.81 22.12 0.22 -3.14 16 19 C 0.28 4.43 6.75 38.46 0.26 4.69 16 20 N -0.84 -5.73 9.05 -51.41 -0.47 -6.20 16 21 C -0.24 -5.47 9.86 22.42 0.22 -5.25 16 22 C 0.16 5.51 7.25 22.66 0.16 5.67 16 23 F -0.15 -6.03 16.51 44.97 0.74 -5.29 16 24 H 0.05 2.39 6.68 -2.38 -0.02 2.38 16 25 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 28 H 0.06 2.01 7.47 -2.39 -0.02 1.99 16 29 H 0.07 2.37 6.44 -2.39 -0.02 2.35 16 30 H 0.09 2.48 5.67 -2.39 -0.01 2.46 16 31 H 0.14 3.45 6.57 -2.91 -0.02 3.43 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.42 0.83 8.83 -92.70 -0.82 0.01 16 34 H 0.41 1.47 8.83 -92.71 -0.82 0.65 16 35 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -80.60 296.78 3.73 -76.87 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -0.49 Total: 5.91 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.03 Total: 3.10 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -2.51 Total: -90.62 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.07 Total: -35.88 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.74 Total: -5.29 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.60 3.73 -76.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.016 kcal (2) G-P(sol) polarization free energy of solvation -80.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds