Wall clock time and date at job start Mon Mar 30 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47001 * 2 1 4 4 C 1.50700 * 109.46700 * 240.00540 * 2 1 3 5 5 H 1.08008 * 119.99979 * 240.00312 * 4 2 1 6 6 C 1.37872 * 120.00399 * 59.99855 * 4 2 1 7 7 N 1.31523 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00348 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46696 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46849 * 119.99936 * 8 6 4 11 11 H 1.48502 * 109.47275 * 239.99993 * 8 6 4 12 12 N 1.46493 * 109.47196 * 120.00706 * 2 1 3 13 13 C 1.46497 * 120.00367 * 59.99751 * 12 2 1 14 14 C 1.34783 * 119.99818 * 239.99615 * 12 2 1 15 15 O 1.21618 * 119.99621 * 5.33907 * 14 12 2 16 16 C 1.47368 * 120.00056 * 185.34095 * 14 12 2 17 17 C 1.39861 * 120.08959 * 314.79545 * 16 14 12 18 18 C 1.36537 * 120.07384 * 179.73641 * 17 16 14 19 19 C 1.39296 * 120.27119 * 0.52410 * 18 17 16 20 20 N 1.39051 * 119.90787 * 179.74026 * 19 18 17 21 21 C 1.39080 * 120.18361 * 359.75496 * 19 18 17 22 22 C 1.38010 * 119.91635 * 359.97438 * 21 19 18 23 23 F 1.35104 * 120.12914 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.46416 * 299.99480 * 1 2 3 25 25 H 1.08991 * 109.47168 * 59.99405 * 1 2 3 26 26 H 1.08993 * 109.47001 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99621 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47081 * 275.32031 * 13 12 2 29 29 H 1.08996 * 109.47549 * 155.32308 * 13 12 2 30 30 H 1.09001 * 109.47339 * 35.31977 * 13 12 2 31 31 H 1.07998 * 119.96517 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.86258 * 180.25818 * 18 17 16 33 33 H 0.97004 * 119.99564 * 180.02562 * 20 19 18 34 34 H 0.96998 * 119.99944 * 0.02562 * 20 19 18 35 35 H 1.07998 * 120.04302 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7934 -0.0358 2.0832 15 8 3.0074 1.1531 1.9424 16 6 3.3813 -0.7603 3.2239 17 6 2.5976 -1.6446 3.9721 18 6 3.1441 -2.3198 5.0256 19 6 4.4801 -2.1243 5.3678 20 7 5.0275 -2.8118 6.4455 21 6 5.2680 -1.2432 4.6349 22 6 4.7250 -0.5609 3.5652 23 9 5.4863 0.2964 2.8506 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 0.6913 -2.1466 1.9158 29 1 2.4167 -2.5572 2.0658 30 1 1.6221 -2.6197 0.4743 31 1 1.5600 -1.7965 3.7140 32 1 2.5368 -3.0049 5.5985 33 1 5.9576 -2.6764 6.6852 34 1 4.4792 -3.4267 6.9574 35 1 6.3037 -1.0937 4.9020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:30 Heat of formation + Delta-G solvation = -46.880231 kcal Electronic energy + Delta-G solvation = -20239.930678 eV Core-core repulsion = 16959.619382 eV Total energy + Delta-G solvation = -3280.311297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.60565 -39.78561 -38.30837 -35.23851 -34.59737 -32.73683 -30.75049 -29.80725 -28.33491 -26.13063 -25.17580 -23.21246 -22.84686 -21.00418 -18.80377 -17.72277 -17.44531 -16.77812 -16.18970 -15.59504 -15.42544 -15.15925 -15.12255 -14.48734 -14.16439 -13.93548 -13.29023 -13.02137 -12.82095 -12.46278 -12.31820 -12.10055 -11.65585 -11.49789 -11.19662 -11.00906 -10.79547 -10.66469 -10.39821 -10.18721 -10.11357 -9.14220 -8.94517 -8.82934 -8.38590 -7.74252 -7.48654 -6.02923 -4.10607 1.19203 1.28323 3.29145 3.32455 3.37347 3.40762 3.50332 3.79308 4.12521 4.43422 4.46761 4.73436 4.98950 5.12853 5.28475 5.34837 5.50632 5.78276 5.92512 6.02600 6.10104 6.15070 6.34257 6.43622 6.70006 6.81291 6.89335 7.11887 7.17877 7.42926 7.48904 7.59725 7.76700 8.07611 8.24614 8.57980 8.88090 9.11446 9.55747 11.02484 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028743 B = 0.005120 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.902644 B = 5467.366202 C = 5590.870050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.585 5.585 13 C 0.077 3.923 14 C 0.551 3.449 15 O -0.544 6.544 16 C -0.212 4.212 17 C -0.014 4.014 18 C -0.217 4.217 19 C 0.255 3.745 20 N -0.869 5.869 21 C -0.249 4.249 22 C 0.197 3.803 23 F -0.121 7.121 24 H 0.011 0.989 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.400 0.600 34 H 0.401 0.599 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -9.997 16.741 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.316 5.316 13 C -0.067 4.067 14 C 0.338 3.662 15 O -0.423 6.423 16 C -0.218 4.218 17 C -0.033 4.033 18 C -0.239 4.239 19 C 0.148 3.852 20 N -0.407 5.407 21 C -0.273 4.273 22 C 0.176 3.824 23 F -0.100 7.100 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.455 -9.202 16.425 19.347 hybrid contribution 0.601 -0.632 -0.690 1.112 sum 5.056 -9.834 15.735 19.232 Atomic orbital electron populations 1.22070 0.98105 0.99368 1.00835 1.18964 0.90977 0.94563 0.79743 0.91838 1.21365 1.31675 1.13002 0.90271 0.92156 1.24891 0.94965 0.94996 0.98939 1.69900 1.36443 1.22638 1.23597 0.86440 0.78572 0.79601 0.82774 1.19814 1.20957 1.20910 1.48122 1.48671 1.11562 1.23236 1.21863 0.98682 0.83641 1.02510 1.17916 0.79553 0.86767 0.81994 1.90761 1.61208 1.14843 1.75472 1.20010 0.93910 1.05442 1.02421 1.20828 0.99732 0.90922 0.91825 1.20270 0.93911 1.07251 1.02498 1.17504 0.91802 0.89223 0.86625 1.42364 1.15134 1.49700 1.33469 1.20320 1.01390 1.05189 1.00394 1.17300 0.87765 0.87910 0.89456 1.91565 1.74762 1.67108 1.76517 0.96952 0.88835 0.95162 0.92770 0.93700 0.91928 0.90418 0.84252 0.85327 0.77195 0.77036 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.82 2.63 -69.08 -0.18 6.64 16 3 H 0.06 1.95 6.91 -51.93 -0.36 1.60 16 4 C -0.52 -14.53 8.03 -34.44 -0.28 -14.81 16 5 H 0.06 1.65 7.25 -52.48 -0.38 1.27 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.59 -13.19 2.75 -176.56 -0.49 -13.68 16 13 C 0.08 1.34 8.04 59.85 0.48 1.82 16 14 C 0.55 12.59 7.08 -12.54 -0.09 12.50 16 15 O -0.54 -14.72 15.81 5.26 0.08 -14.63 16 16 C -0.21 -3.78 5.08 -104.89 -0.53 -4.32 16 17 C -0.01 -0.19 7.38 -39.59 -0.29 -0.48 16 18 C -0.22 -2.31 9.81 -39.80 -0.39 -2.70 16 19 C 0.26 2.67 6.75 -83.88 -0.57 2.10 16 20 N -0.87 -5.55 9.05 32.40 0.29 -5.25 16 21 C -0.25 -3.17 9.86 -39.35 -0.39 -3.56 16 22 C 0.20 3.35 7.25 -38.98 -0.28 3.07 16 23 F -0.12 -2.39 16.39 2.25 0.04 -2.35 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.67 7.59 -51.92 -0.39 0.28 16 29 H 0.06 0.94 5.27 -51.93 -0.27 0.66 16 30 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 31 H 0.14 1.71 6.19 -52.49 -0.32 1.38 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.40 1.89 8.83 -40.82 -0.36 1.53 16 34 H 0.40 1.70 8.83 -40.82 -0.36 1.34 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -33.88 296.52 -6.21 -40.09 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.93 Total: 1.18 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.28 Total: -1.27 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.43 Total: -43.85 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.88 -6.21 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.793 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds