Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.47001 * 2 1 4 4 C 1.50700 * 109.46700 * 240.00540 * 2 1 3 5 5 H 1.08008 * 119.99979 * 240.00312 * 4 2 1 6 6 C 1.37872 * 120.00399 * 59.99855 * 4 2 1 7 7 N 1.31523 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00348 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46696 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46849 * 119.99936 * 8 6 4 11 11 H 1.48502 * 109.47275 * 239.99993 * 8 6 4 12 12 N 1.46493 * 109.47196 * 120.00706 * 2 1 3 13 13 C 1.46497 * 120.00367 * 59.99751 * 12 2 1 14 14 C 1.34783 * 119.99818 * 239.99615 * 12 2 1 15 15 O 1.21618 * 119.99621 * 5.33907 * 14 12 2 16 16 C 1.47368 * 120.00056 * 185.34095 * 14 12 2 17 17 C 1.39861 * 120.08959 * 314.79545 * 16 14 12 18 18 C 1.36537 * 120.07384 * 179.73641 * 17 16 14 19 19 C 1.39296 * 120.27119 * 0.52410 * 18 17 16 20 20 N 1.39051 * 119.90787 * 179.74026 * 19 18 17 21 21 C 1.39080 * 120.18361 * 359.75496 * 19 18 17 22 22 C 1.38010 * 119.91635 * 359.97438 * 21 19 18 23 23 F 1.35104 * 120.12914 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.46416 * 299.99480 * 1 2 3 25 25 H 1.08991 * 109.47168 * 59.99405 * 1 2 3 26 26 H 1.08993 * 109.47001 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99621 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47081 * 275.32031 * 13 12 2 29 29 H 1.08996 * 109.47549 * 155.32308 * 13 12 2 30 30 H 1.09001 * 109.47339 * 35.31977 * 13 12 2 31 31 H 1.07998 * 119.96517 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.86258 * 180.25818 * 18 17 16 33 33 H 0.97004 * 119.99564 * 180.02562 * 20 19 18 34 34 H 0.96998 * 119.99944 * 0.02562 * 20 19 18 35 35 H 1.07998 * 120.04302 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7934 -0.0358 2.0832 15 8 3.0074 1.1531 1.9424 16 6 3.3813 -0.7603 3.2239 17 6 2.5976 -1.6446 3.9721 18 6 3.1441 -2.3198 5.0256 19 6 4.4801 -2.1243 5.3678 20 7 5.0275 -2.8118 6.4455 21 6 5.2680 -1.2432 4.6349 22 6 4.7250 -0.5609 3.5652 23 9 5.4863 0.2964 2.8506 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 0.6913 -2.1466 1.9158 29 1 2.4167 -2.5572 2.0658 30 1 1.6221 -2.6197 0.4743 31 1 1.5600 -1.7965 3.7140 32 1 2.5368 -3.0049 5.5985 33 1 5.9576 -2.6764 6.6852 34 1 4.4792 -3.4267 6.9574 35 1 6.3037 -1.0937 4.9020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = -71.497839 kcal Electronic energy + Delta-G solvation = -20240.998178 eV Core-core repulsion = 16959.619382 eV Total energy + Delta-G solvation = -3281.378796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.95029 -41.15607 -39.63742 -37.13304 -35.63703 -34.62131 -31.95429 -31.37194 -29.61822 -27.66269 -27.31175 -24.54618 -23.89440 -22.60407 -20.45466 -18.77775 -18.61573 -18.34837 -17.94492 -17.32236 -16.72247 -16.37429 -16.29575 -16.10017 -15.78356 -15.25586 -14.76332 -14.42866 -14.02632 -13.99105 -13.82280 -13.58488 -13.33440 -13.02661 -12.89406 -12.72624 -12.66699 -12.24941 -12.18295 -12.10808 -11.44632 -11.19687 -10.73450 -10.50726 -9.88354 -9.35885 -8.57484 -8.15177 -6.32157 0.06126 0.28792 1.40084 1.42030 1.53676 1.83870 2.31380 2.47988 2.74044 2.79708 3.12524 3.39993 3.70972 3.81224 4.12457 4.34671 4.44952 4.58891 4.70722 4.75816 4.88738 4.95120 5.03316 5.05620 5.09002 5.18103 5.33851 5.47791 5.59907 5.66550 5.73108 6.04796 6.15544 6.44668 6.75254 6.79622 6.95656 7.29332 7.45775 8.89728 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028743 B = 0.005120 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.902644 B = 5467.366202 C = 5590.870050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.270 1.270 11 H -0.286 1.286 12 N -0.592 5.592 13 C 0.075 3.925 14 C 0.541 3.459 15 O -0.608 6.608 16 C -0.249 4.249 17 C -0.010 4.010 18 C -0.200 4.200 19 C 0.276 3.724 20 N -0.843 5.843 21 C -0.248 4.248 22 C 0.164 3.836 23 F -0.152 7.152 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.412 0.588 34 H 0.418 0.582 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -13.743 19.144 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.212 1.212 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.331 3.669 15 O -0.491 6.491 16 C -0.255 4.255 17 C -0.029 4.029 18 C -0.222 4.222 19 C 0.165 3.835 20 N -0.380 5.380 21 C -0.271 4.271 22 C 0.143 3.857 23 F -0.130 7.130 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.191 0.809 33 H 0.242 0.758 34 H 0.250 0.750 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.615 -13.031 18.897 23.414 hybrid contribution 0.611 0.464 -1.234 1.454 sum 5.227 -12.567 17.662 22.298 Atomic orbital electron populations 1.21840 0.96629 1.00336 0.99964 1.18584 0.92059 0.92026 0.81545 0.97833 1.21588 1.31959 1.13093 0.91137 0.92212 1.25767 0.95020 0.95658 1.02062 1.70044 1.37283 1.23882 1.24419 0.85363 0.78289 0.78413 0.78670 1.18963 1.19549 1.21182 1.48121 1.48641 1.13428 1.21938 1.22131 1.01181 0.80538 1.02865 1.18789 0.78678 0.86380 0.83075 1.90699 1.63236 1.17789 1.77405 1.19703 0.94908 1.08374 1.02526 1.20954 0.99901 0.90006 0.92028 1.20668 0.94136 1.06326 1.01100 1.17585 0.91622 0.87797 0.86502 1.42391 1.16053 1.48124 1.31472 1.20478 1.02639 1.04914 0.99114 1.17782 0.87808 0.89047 0.91099 1.91480 1.75434 1.68483 1.77621 0.96129 0.91335 0.93024 0.92577 0.90628 0.89107 0.91494 0.82931 0.80919 0.75756 0.75041 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.97 71.99 0.65 -5.86 16 2 C 0.26 14.47 2.63 44.25 0.12 14.59 16 3 H 0.00 0.25 6.91 -2.39 -0.02 0.23 16 4 C -0.54 -30.83 8.03 25.60 0.21 -30.62 16 5 H 0.06 3.33 7.25 -2.91 -0.02 3.31 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -54.64 11.32 21.45 0.24 -54.40 16 8 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 N -0.59 -27.55 2.75 -830.74 -2.29 -29.84 16 13 C 0.07 2.51 8.04 127.77 1.03 3.54 16 14 C 0.54 26.08 7.08 86.65 0.61 26.69 16 15 O -0.61 -35.79 15.81 -4.09 -0.06 -35.85 16 16 C -0.25 -8.97 5.08 -20.04 -0.10 -9.07 16 17 C -0.01 -0.23 7.38 22.27 0.16 -0.07 16 18 C -0.20 -3.26 9.81 22.13 0.22 -3.04 16 19 C 0.28 4.50 6.75 38.45 0.26 4.76 16 20 N -0.84 -5.90 9.05 -51.41 -0.47 -6.36 16 21 C -0.25 -5.76 9.86 22.42 0.22 -5.53 16 22 C 0.16 5.66 7.25 22.66 0.16 5.83 16 23 F -0.15 -6.39 16.39 44.97 0.74 -5.65 16 24 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.08 2.06 7.59 -2.38 -0.02 2.05 16 29 H 0.09 2.53 5.27 -2.39 -0.01 2.52 16 30 H 0.07 2.39 6.96 -2.39 -0.02 2.38 16 31 H 0.15 3.23 6.19 -2.91 -0.02 3.21 16 32 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.41 1.65 8.83 -92.71 -0.82 0.83 16 34 H 0.42 0.80 8.83 -92.71 -0.82 -0.02 16 35 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -81.66 296.52 3.68 -77.98 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -0.49 Total: 5.19 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 3.98 Total: 2.47 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.51 Total: -90.60 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.06 Total: -35.85 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.74 Total: -5.65 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -81.66 3.68 -77.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.483 kcal (2) G-P(sol) polarization free energy of solvation -81.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds