Wall clock time and date at job start Mon Mar 30 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.50700 * 109.46867 * 120.00229 * 2 1 3 5 5 H 1.08000 * 119.99577 * 120.00440 * 4 2 1 6 6 C 1.37874 * 120.00050 * 299.99673 * 4 2 1 7 7 N 1.31510 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99791 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47018 * 60.00236 * 8 6 4 10 10 H 1.48503 * 109.46811 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47378 * 299.99985 * 8 6 4 12 12 N 1.46501 * 109.46876 * 240.00030 * 2 1 3 13 13 C 1.46494 * 120.00308 * 299.99994 * 12 2 1 14 14 C 1.34776 * 119.99967 * 120.00040 * 12 2 1 15 15 O 1.21625 * 119.99965 * 5.33512 * 14 12 2 16 16 C 1.47316 * 120.00177 * 185.33147 * 14 12 2 17 17 C 1.39796 * 120.18288 * 45.37216 * 16 14 12 18 18 C 1.37637 * 119.95329 * 179.97438 * 17 16 14 19 19 C 1.38901 * 120.32398 * 359.97438 * 18 17 16 20 20 F 1.35102 * 119.81890 * 180.02562 * 19 18 17 21 21 C 1.38244 * 120.36819 * 0.04450 * 19 18 17 22 22 C 1.38829 * 120.04351 * 359.69765 * 21 19 18 23 23 N 1.38876 * 120.16359 * 180.27764 * 22 21 19 24 24 H 1.08993 * 109.46739 * 59.99982 * 1 2 3 25 25 H 1.08998 * 109.47008 * 299.99795 * 1 2 3 26 26 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00138 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47401 * 95.04443 * 13 12 2 29 29 H 1.08999 * 109.47431 * 215.04496 * 13 12 2 30 30 H 1.09006 * 109.47257 * 335.04691 * 13 12 2 31 31 H 1.08003 * 120.02340 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.83617 * 179.97438 * 18 17 16 33 33 H 1.08010 * 119.97831 * 179.97438 * 21 19 18 34 34 H 0.97006 * 119.99819 * 177.58089 * 23 22 21 35 35 H 0.96997 * 120.00124 * 357.58460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8269 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1672 1.0967 -1.8445 16 6 3.1871 -0.6913 -3.3424 17 6 2.2392 -1.3855 -4.0999 18 6 2.6123 -1.9958 -5.2757 19 6 3.9279 -1.9256 -5.7156 20 9 4.2829 -2.5281 -6.8716 21 6 4.8764 -1.2430 -4.9769 22 6 4.5156 -0.6172 -3.7913 23 7 5.4651 0.0741 -3.0502 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7082 1.1607 3.4844 28 1 0.7882 -2.1447 -2.0743 29 1 2.4996 -2.6043 -1.9069 30 1 1.4421 -2.5741 -0.4755 31 1 1.2147 -1.4428 -3.7626 32 1 1.8785 -2.5320 -5.8592 33 1 5.8977 -1.1927 -5.3246 34 1 5.2034 0.5399 -2.2405 35 1 6.3899 0.0912 -3.3421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:40 Heat of formation + Delta-G solvation = -54.612023 kcal Electronic energy + Delta-G solvation = -20220.255962 eV Core-core repulsion = 16939.609389 eV Total energy + Delta-G solvation = -3280.646572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.92707 -40.02563 -37.90454 -35.51542 -34.33184 -32.90241 -30.88616 -29.25636 -28.51958 -26.17408 -25.24733 -23.55771 -22.57243 -21.00745 -18.80237 -17.81252 -17.33789 -16.80290 -16.25749 -15.70007 -15.55043 -15.23709 -15.11370 -14.53417 -14.23098 -13.91061 -13.32338 -12.97044 -12.77377 -12.60030 -12.33388 -12.23807 -11.65626 -11.53313 -11.18310 -11.06473 -10.87510 -10.73157 -10.53423 -10.29363 -10.19823 -9.24499 -9.08326 -8.73470 -8.45580 -7.69918 -7.53533 -6.10052 -4.18207 1.02962 1.51185 3.20558 3.26009 3.31304 3.33129 3.75727 3.81996 4.03562 4.37135 4.39076 4.77282 5.05081 5.08515 5.21297 5.38312 5.59554 5.81049 5.90700 5.98128 6.04072 6.19148 6.36108 6.38653 6.72431 6.79166 6.81988 7.02733 7.35516 7.46906 7.49546 7.67752 7.83242 7.97897 8.16605 8.48068 8.78697 8.98483 9.48286 10.95187 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.004939 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.175612 B = 5667.751115 C = 5845.575372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.083 3.917 14 C 0.554 3.446 15 O -0.556 6.556 16 C -0.213 4.213 17 C -0.010 4.010 18 C -0.225 4.225 19 C 0.159 3.841 20 F -0.141 7.141 21 C -0.250 4.250 22 C 0.293 3.707 23 N -0.854 5.854 24 H 0.011 0.989 25 H 0.094 0.906 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.416 0.584 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -6.171 -12.877 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.061 4.061 14 C 0.342 3.658 15 O -0.437 6.437 16 C -0.222 4.222 17 C -0.030 4.030 18 C -0.246 4.246 19 C 0.139 3.861 20 F -0.120 7.120 21 C -0.274 4.274 22 C 0.181 3.819 23 N -0.392 5.392 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.250 0.750 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.230 -5.468 -12.566 14.342 hybrid contribution 0.608 -0.528 0.790 1.128 sum 4.838 -5.996 -11.776 14.073 Atomic orbital electron populations 1.22096 0.98056 0.99503 1.00865 1.18982 0.90906 0.94520 0.79887 0.91841 1.21265 1.31955 1.13043 0.90259 0.92297 1.24882 0.94915 0.94958 0.98937 1.69864 1.36202 1.22558 1.23898 0.86554 0.79205 0.79601 0.82004 1.20295 1.21163 1.20221 1.48180 1.48360 1.11561 1.23112 1.21723 0.98917 0.83136 1.02336 1.17996 0.79178 0.85701 0.82941 1.90704 1.56071 1.18849 1.78055 1.19661 0.93369 1.09168 0.99952 1.21018 0.99133 0.90883 0.91936 1.20717 0.94804 1.08834 1.00212 1.17480 0.93240 0.93383 0.81997 1.91480 1.92684 1.81167 1.46647 1.20320 1.00425 1.08994 0.97645 1.17276 0.88179 0.87757 0.88688 1.42707 1.09294 1.57010 1.30159 0.96979 0.88770 0.95066 0.92602 0.93834 0.92581 0.89932 0.84369 0.84870 0.84809 0.74953 0.77461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.42 2.63 -69.08 -0.18 6.23 16 3 H 0.06 1.83 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -13.92 7.96 -34.44 -0.27 -14.20 16 5 H 0.06 1.54 7.42 -52.49 -0.39 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 N -0.58 -12.18 2.75 -176.57 -0.49 -12.67 16 13 C 0.08 1.38 7.96 59.84 0.48 1.86 16 14 C 0.55 11.38 6.80 -12.57 -0.09 11.30 16 15 O -0.56 -13.19 14.56 5.26 0.08 -13.12 16 16 C -0.21 -3.51 4.85 -104.80 -0.51 -4.02 16 17 C -0.01 -0.14 8.01 -39.22 -0.31 -0.46 16 18 C -0.22 -2.74 10.00 -39.56 -0.40 -3.14 16 19 C 0.16 2.03 7.30 -39.33 -0.29 1.74 16 20 F -0.14 -1.76 17.26 2.25 0.04 -1.72 16 21 C -0.25 -3.18 9.85 -39.36 -0.39 -3.57 16 22 C 0.29 4.32 6.74 -83.63 -0.56 3.76 16 23 N -0.85 -11.69 8.92 32.54 0.29 -11.40 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 29 H 0.06 0.84 6.82 -51.93 -0.35 0.48 16 30 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 31 H 0.14 1.74 6.28 -52.48 -0.33 1.41 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.42 6.74 6.48 -40.82 -0.26 6.48 16 35 H 0.40 4.01 8.84 -40.82 -0.36 3.65 16 LS Contribution 294.92 15.07 4.44 4.44 Total: -1.00 -29.77 294.92 -6.20 -35.98 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.89 Total: 8.75 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.28 Total: -1.92 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.43 Total: -48.09 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.77 -6.20 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.634 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds