Wall clock time and date at job start Mon Mar 30 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.50700 * 109.46867 * 120.00229 * 2 1 3 5 5 H 1.08000 * 119.99577 * 120.00440 * 4 2 1 6 6 C 1.37874 * 120.00050 * 299.99673 * 4 2 1 7 7 N 1.31510 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99791 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47018 * 60.00236 * 8 6 4 10 10 H 1.48503 * 109.46811 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47378 * 299.99985 * 8 6 4 12 12 N 1.46501 * 109.46876 * 240.00030 * 2 1 3 13 13 C 1.46494 * 120.00308 * 299.99994 * 12 2 1 14 14 C 1.34776 * 119.99967 * 120.00040 * 12 2 1 15 15 O 1.21625 * 119.99965 * 5.33512 * 14 12 2 16 16 C 1.47316 * 120.00177 * 185.33147 * 14 12 2 17 17 C 1.39796 * 120.18288 * 45.37216 * 16 14 12 18 18 C 1.37637 * 119.95329 * 179.97438 * 17 16 14 19 19 C 1.38901 * 120.32398 * 359.97438 * 18 17 16 20 20 F 1.35102 * 119.81890 * 180.02562 * 19 18 17 21 21 C 1.38244 * 120.36819 * 0.04450 * 19 18 17 22 22 C 1.38829 * 120.04351 * 359.69765 * 21 19 18 23 23 N 1.38876 * 120.16359 * 180.27764 * 22 21 19 24 24 H 1.08993 * 109.46739 * 59.99982 * 1 2 3 25 25 H 1.08998 * 109.47008 * 299.99795 * 1 2 3 26 26 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00138 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47401 * 95.04443 * 13 12 2 29 29 H 1.08999 * 109.47431 * 215.04496 * 13 12 2 30 30 H 1.09006 * 109.47257 * 335.04691 * 13 12 2 31 31 H 1.08003 * 120.02340 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.83617 * 179.97438 * 18 17 16 33 33 H 1.08010 * 119.97831 * 179.97438 * 21 19 18 34 34 H 0.97006 * 119.99819 * 177.58089 * 23 22 21 35 35 H 0.96997 * 120.00124 * 357.58460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8269 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1672 1.0967 -1.8445 16 6 3.1871 -0.6913 -3.3424 17 6 2.2392 -1.3855 -4.0999 18 6 2.6123 -1.9958 -5.2757 19 6 3.9279 -1.9256 -5.7156 20 9 4.2829 -2.5281 -6.8716 21 6 4.8764 -1.2430 -4.9769 22 6 4.5156 -0.6172 -3.7913 23 7 5.4651 0.0741 -3.0502 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7082 1.1607 3.4844 28 1 0.7882 -2.1447 -2.0743 29 1 2.4996 -2.6043 -1.9069 30 1 1.4421 -2.5741 -0.4755 31 1 1.2147 -1.4428 -3.7626 32 1 1.8785 -2.5320 -5.8592 33 1 5.8977 -1.1927 -5.3246 34 1 5.2034 0.5399 -2.2405 35 1 6.3899 0.0912 -3.3421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:39 Heat of formation + Delta-G solvation = -73.720970 kcal Electronic energy + Delta-G solvation = -20221.084588 eV Core-core repulsion = 16939.609389 eV Total energy + Delta-G solvation = -3281.475198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.91451 -41.37602 -39.26255 -37.18341 -35.53470 -34.71491 -32.31108 -30.73869 -29.73347 -27.62550 -27.28305 -24.86091 -23.70485 -22.54233 -20.35811 -18.86800 -18.57132 -18.38172 -17.94685 -17.34661 -16.59491 -16.41333 -16.33522 -16.09400 -15.67389 -15.18313 -14.74178 -14.42820 -14.07833 -13.89078 -13.73396 -13.61460 -13.43439 -13.02674 -12.87488 -12.74461 -12.64865 -12.19586 -12.16038 -12.11616 -11.56949 -11.18891 -10.73761 -10.48958 -9.82218 -9.33572 -8.66239 -8.13474 -6.29695 -0.07845 0.49006 1.42573 1.44110 1.51698 1.79754 2.30322 2.49272 2.73315 2.75928 3.14676 3.36279 3.70688 3.80280 4.15471 4.34913 4.47386 4.53970 4.70408 4.75959 4.89476 4.94026 4.96922 5.05867 5.09188 5.19981 5.31947 5.48844 5.62554 5.67932 5.80454 6.04264 6.17763 6.34156 6.73618 6.77376 6.87063 7.30133 7.46675 8.90528 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.004939 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.175612 B = 5667.751115 C = 5845.575372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.549 3.451 15 O -0.601 6.601 16 C -0.239 4.239 17 C -0.006 4.006 18 C -0.213 4.213 19 C 0.162 3.838 20 F -0.137 7.137 21 C -0.243 4.243 22 C 0.282 3.718 23 N -0.854 5.854 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.404 0.596 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -8.434 -14.374 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.188 1.188 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.339 3.661 15 O -0.485 6.485 16 C -0.247 4.247 17 C -0.025 4.025 18 C -0.234 4.234 19 C 0.142 3.858 20 F -0.115 7.115 21 C -0.267 4.267 22 C 0.170 3.830 23 N -0.391 5.391 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.235 0.765 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.466 -7.778 -14.105 16.716 hybrid contribution 0.577 0.179 1.148 1.297 sum 5.043 -7.599 -12.957 15.845 Atomic orbital electron populations 1.21881 0.96925 1.00247 1.00052 1.18578 0.91700 0.92270 0.81487 0.97027 1.21513 1.31933 1.13029 0.91147 0.92318 1.25687 0.95064 0.95607 1.01869 1.70007 1.37188 1.23815 1.24459 0.85545 0.78349 0.79007 0.78312 1.20388 1.20939 1.18809 1.48133 1.48597 1.13083 1.22031 1.21919 1.00987 0.80610 1.02542 1.18638 0.78163 0.85258 0.83995 1.90668 1.57589 1.20961 1.79286 1.19437 0.94964 1.11463 0.98858 1.21107 0.99072 0.90261 0.92070 1.20963 0.95192 1.07809 0.99440 1.17606 0.93492 0.92821 0.81892 1.91501 1.92674 1.80970 1.46356 1.20492 1.01713 1.07960 0.96529 1.17443 0.87819 0.88250 0.89451 1.42696 1.10181 1.56658 1.29593 0.95932 0.91381 0.93347 0.92644 0.90776 0.90610 0.91097 0.83243 0.81970 0.82495 0.76480 0.75678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.97 71.98 0.65 -5.63 16 2 C 0.26 13.45 2.63 44.25 0.12 13.56 16 3 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 4 C -0.54 -28.91 7.96 25.60 0.20 -28.70 16 5 H 0.06 3.08 7.42 -2.91 -0.02 3.06 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 12 N -0.59 -24.80 2.75 -830.80 -2.29 -27.09 16 13 C 0.08 2.60 7.96 127.77 1.02 3.62 16 14 C 0.55 22.94 6.80 86.63 0.59 23.53 16 15 O -0.60 -29.92 14.56 -4.11 -0.06 -29.98 16 16 C -0.24 -7.61 4.85 -19.98 -0.10 -7.71 16 17 C -0.01 -0.15 8.01 22.50 0.18 0.03 16 18 C -0.21 -4.39 10.00 22.29 0.22 -4.17 16 19 C 0.16 3.56 7.30 22.43 0.16 3.72 16 20 F -0.14 -2.90 17.26 44.97 0.78 -2.12 16 21 C -0.24 -5.51 9.85 22.41 0.22 -5.29 16 22 C 0.28 7.97 6.74 38.70 0.26 8.23 16 23 N -0.85 -23.14 8.92 -50.97 -0.45 -23.60 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 26 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.07 1.89 6.75 -2.39 -0.02 1.88 16 29 H 0.08 2.10 6.82 -2.39 -0.02 2.09 16 30 H 0.07 2.42 7.10 -2.38 -0.02 2.40 16 31 H 0.15 3.30 6.28 -2.91 -0.02 3.28 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.40 13.51 6.48 -92.70 -0.60 12.91 16 35 H 0.41 7.98 8.84 -92.71 -0.82 7.16 16 Total: -1.00 -66.28 294.92 3.94 -62.34 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.27 Total: 25.18 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 3.97 Total: 2.59 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -2.50 Total: -102.64 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.06 Total: -29.98 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.28 3.94 -62.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.382 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds