Wall clock time and date at job start Mon Mar 30 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47303 * 2 1 4 4 C 1.50706 * 109.46903 * 239.99766 * 2 1 3 5 5 H 1.07995 * 119.99902 * 239.99880 * 4 2 1 6 6 C 1.37877 * 119.99554 * 60.00059 * 4 2 1 7 7 N 1.31514 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47164 * 60.00400 * 8 6 4 10 10 H 1.48507 * 109.47280 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47280 * 300.00107 * 8 6 4 12 12 N 1.46503 * 109.47152 * 120.00338 * 2 1 3 13 13 C 1.46505 * 120.00106 * 59.99551 * 12 2 1 14 14 C 1.34780 * 119.99843 * 239.99677 * 12 2 1 15 15 O 1.21616 * 119.99692 * 4.48789 * 14 12 2 16 16 C 1.47310 * 119.99876 * 184.48161 * 14 12 2 17 17 C 1.39805 * 120.18229 * 309.87636 * 16 14 12 18 18 C 1.37640 * 119.94819 * 180.27521 * 17 16 14 19 19 C 1.38910 * 120.32779 * 359.49351 * 18 17 16 20 20 F 1.35096 * 119.81681 * 180.27984 * 19 18 17 21 21 C 1.38241 * 120.36301 * 0.50978 * 19 18 17 22 22 C 1.38829 * 120.04359 * 359.74719 * 21 19 18 23 23 N 1.38882 * 120.16255 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47249 * 299.99890 * 1 2 3 26 26 H 1.08999 * 109.47268 * 60.00012 * 1 2 3 27 27 H 0.97000 * 120.00041 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47015 * 273.01244 * 13 12 2 29 29 H 1.08997 * 109.46567 * 33.01798 * 13 12 2 30 30 H 1.09000 * 109.46977 * 153.01271 * 13 12 2 31 31 H 1.08001 * 120.02590 * 359.97438 * 17 16 14 32 32 H 1.08009 * 119.83448 * 179.72404 * 18 17 16 33 33 H 1.08009 * 119.97791 * 179.76819 * 21 19 18 34 34 H 0.96993 * 120.00077 * 174.64917 * 23 22 21 35 35 H 0.97000 * 119.99546 * 354.65542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8277 -2.5198 -4.0082 10 1 1.8276 -0.4193 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0199 1.1497 1.9338 16 6 3.3655 -0.7558 3.2340 17 6 2.5468 -1.5456 4.0467 18 6 3.0855 -2.2118 5.1240 19 6 4.4426 -2.1122 5.4031 20 9 4.9615 -2.7750 6.4598 21 6 5.2643 -1.3349 4.6083 22 6 4.7361 -0.6522 3.5210 23 7 5.5594 0.1290 2.7206 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7088 1.1614 -3.4844 28 1 0.7104 -2.1453 1.9526 29 1 1.5819 -2.6099 0.4718 30 1 2.4375 -2.5681 2.0320 31 1 1.4916 -1.6291 3.8323 32 1 2.4505 -2.8179 5.7532 33 1 6.3180 -1.2590 4.8332 34 1 5.2050 0.5421 1.9178 35 1 6.4889 0.2613 2.9644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:43 Heat of formation + Delta-G solvation = -54.254124 kcal Electronic energy + Delta-G solvation = -20234.889453 eV Core-core repulsion = 16954.258401 eV Total energy + Delta-G solvation = -3280.631053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.92301 -40.03265 -37.90674 -35.48293 -34.36054 -32.91304 -30.91214 -29.24800 -28.50984 -26.18140 -25.25520 -23.54834 -22.58088 -21.00746 -18.79851 -17.80535 -17.33152 -16.84714 -16.24456 -15.71091 -15.53156 -15.24231 -15.11168 -14.55639 -14.18360 -13.90347 -13.35387 -12.95654 -12.84052 -12.57204 -12.32487 -12.23490 -11.67934 -11.53106 -11.19641 -11.07167 -10.87855 -10.73152 -10.50316 -10.29105 -10.19773 -9.25138 -9.09395 -8.70929 -8.46132 -7.69839 -7.53234 -6.11082 -4.19620 1.04677 1.50572 3.21655 3.25073 3.30524 3.32377 3.73219 3.79551 4.03125 4.36125 4.39173 4.77750 5.05225 5.08643 5.20208 5.37947 5.59699 5.77985 5.94033 5.98269 6.03749 6.18825 6.35333 6.39049 6.73276 6.79242 6.82519 7.03643 7.35822 7.46184 7.49599 7.67155 7.80988 7.97886 8.15258 8.47927 8.77452 8.98352 9.47065 10.94056 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.005026 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.917917 B = 5569.327383 C = 5708.805631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.078 3.922 14 C 0.552 3.448 15 O -0.554 6.554 16 C -0.210 4.210 17 C -0.012 4.012 18 C -0.224 4.224 19 C 0.158 3.842 20 F -0.141 7.141 21 C -0.248 4.248 22 C 0.291 3.709 23 N -0.853 5.853 24 H 0.030 0.970 25 H 0.011 0.989 26 H 0.093 0.907 27 H 0.264 0.736 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.414 0.586 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 -6.374 12.199 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.066 4.066 14 C 0.340 3.660 15 O -0.434 6.434 16 C -0.219 4.219 17 C -0.031 4.031 18 C -0.245 4.245 19 C 0.138 3.862 20 F -0.120 7.120 21 C -0.272 4.272 22 C 0.180 3.820 23 N -0.390 5.390 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.247 0.753 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.996 -5.646 11.939 14.120 hybrid contribution 0.602 -0.522 -0.858 1.171 sum 5.598 -6.167 11.081 13.862 Atomic orbital electron populations 1.22078 0.98085 0.99460 1.00863 1.18974 0.91066 0.94468 0.79728 0.91848 1.21270 1.32062 1.13095 0.90247 0.92267 1.24884 0.94904 0.94953 0.98934 1.69870 1.36160 1.22493 1.23918 0.86554 0.79183 0.79623 0.81997 1.20200 1.21151 1.20300 1.48203 1.48229 1.11676 1.23050 1.21790 0.98939 0.83357 1.02507 1.17999 0.79399 0.86592 0.82037 1.90736 1.61652 1.14985 1.76069 1.19658 0.92764 1.07345 1.02122 1.20978 0.99673 0.90974 0.91520 1.20714 0.93424 1.08020 1.02335 1.17468 0.91833 0.92385 0.84546 1.91478 1.87418 1.78618 1.54464 1.20316 1.00596 1.06503 0.99777 1.17241 0.88834 0.87516 0.88402 1.42583 1.12641 1.54727 1.29057 0.95105 0.96942 0.88823 0.92583 0.93683 0.90272 0.92026 0.84486 0.84860 0.84789 0.75313 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.26 6.43 2.63 -69.08 -0.18 6.25 16 3 H 0.06 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.89 8.01 -34.44 -0.28 -14.17 16 5 H 0.06 1.53 7.28 -52.49 -0.38 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.58 -12.18 2.75 -176.57 -0.49 -12.67 16 13 C 0.08 1.31 8.13 59.85 0.49 1.79 16 14 C 0.55 11.35 6.59 -12.57 -0.08 11.27 16 15 O -0.55 -13.19 15.02 5.26 0.08 -13.11 16 16 C -0.21 -3.47 4.87 -104.80 -0.51 -3.98 16 17 C -0.01 -0.17 7.62 -39.21 -0.30 -0.46 16 18 C -0.22 -2.73 10.00 -39.55 -0.40 -3.12 16 19 C 0.16 2.01 7.30 -39.33 -0.29 1.73 16 20 F -0.14 -1.77 17.26 2.25 0.04 -1.73 16 21 C -0.25 -3.17 9.85 -39.36 -0.39 -3.56 16 22 C 0.29 4.32 6.74 -83.63 -0.56 3.76 16 23 N -0.85 -11.74 8.88 32.54 0.29 -11.45 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.04 0.66 7.59 -51.93 -0.39 0.26 16 29 H 0.08 1.41 6.98 -51.93 -0.36 1.04 16 30 H 0.06 0.90 5.71 -51.93 -0.30 0.61 16 31 H 0.14 1.69 6.67 -52.49 -0.35 1.34 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.41 6.71 6.83 -40.82 -0.28 6.43 16 35 H 0.40 4.06 8.84 -40.82 -0.36 3.70 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -29.81 295.25 -6.18 -35.99 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.90 Total: 8.85 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.26 Total: -1.96 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.43 Total: -48.08 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.81 -6.18 -35.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.264 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds