Wall clock time and date at job start Mon Mar 30 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47303 * 2 1 4 4 C 1.50706 * 109.46903 * 239.99766 * 2 1 3 5 5 H 1.07995 * 119.99902 * 239.99880 * 4 2 1 6 6 C 1.37877 * 119.99554 * 60.00059 * 4 2 1 7 7 N 1.31514 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47164 * 60.00400 * 8 6 4 10 10 H 1.48507 * 109.47280 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47280 * 300.00107 * 8 6 4 12 12 N 1.46503 * 109.47152 * 120.00338 * 2 1 3 13 13 C 1.46505 * 120.00106 * 59.99551 * 12 2 1 14 14 C 1.34780 * 119.99843 * 239.99677 * 12 2 1 15 15 O 1.21616 * 119.99692 * 4.48789 * 14 12 2 16 16 C 1.47310 * 119.99876 * 184.48161 * 14 12 2 17 17 C 1.39805 * 120.18229 * 309.87636 * 16 14 12 18 18 C 1.37640 * 119.94819 * 180.27521 * 17 16 14 19 19 C 1.38910 * 120.32779 * 359.49351 * 18 17 16 20 20 F 1.35096 * 119.81681 * 180.27984 * 19 18 17 21 21 C 1.38241 * 120.36301 * 0.50978 * 19 18 17 22 22 C 1.38829 * 120.04359 * 359.74719 * 21 19 18 23 23 N 1.38882 * 120.16255 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47249 * 299.99890 * 1 2 3 26 26 H 1.08999 * 109.47268 * 60.00012 * 1 2 3 27 27 H 0.97000 * 120.00041 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47015 * 273.01244 * 13 12 2 29 29 H 1.08997 * 109.46567 * 33.01798 * 13 12 2 30 30 H 1.09000 * 109.46977 * 153.01271 * 13 12 2 31 31 H 1.08001 * 120.02590 * 359.97438 * 17 16 14 32 32 H 1.08009 * 119.83448 * 179.72404 * 18 17 16 33 33 H 1.08009 * 119.97791 * 179.76819 * 21 19 18 34 34 H 0.96993 * 120.00077 * 174.64917 * 23 22 21 35 35 H 0.97000 * 119.99546 * 354.65542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8277 -2.5198 -4.0082 10 1 1.8276 -0.4193 -5.2205 11 1 3.8073 -1.1191 -4.0078 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0199 1.1497 1.9338 16 6 3.3655 -0.7558 3.2340 17 6 2.5468 -1.5456 4.0467 18 6 3.0855 -2.2118 5.1240 19 6 4.4426 -2.1122 5.4031 20 9 4.9615 -2.7750 6.4598 21 6 5.2643 -1.3349 4.6083 22 6 4.7361 -0.6522 3.5210 23 7 5.5594 0.1290 2.7206 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7088 1.1614 -3.4844 28 1 0.7104 -2.1453 1.9526 29 1 1.5819 -2.6099 0.4718 30 1 2.4375 -2.5681 2.0320 31 1 1.4916 -1.6291 3.8323 32 1 2.4505 -2.8179 5.7532 33 1 6.3180 -1.2590 4.8332 34 1 5.2050 0.5421 1.9178 35 1 6.4889 0.2613 2.9644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:42 Heat of formation + Delta-G solvation = -73.433450 kcal Electronic energy + Delta-G solvation = -20235.721131 eV Core-core repulsion = 16954.258401 eV Total energy + Delta-G solvation = -3281.462731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.91269 -41.38576 -39.27074 -37.16567 -35.55317 -34.72708 -32.33998 -30.73171 -29.73113 -27.63696 -27.29156 -24.85714 -23.71147 -22.55241 -20.35073 -18.85793 -18.56694 -18.41389 -17.95798 -17.34748 -16.60106 -16.42531 -16.30915 -16.10590 -15.67009 -15.17686 -14.76228 -14.40577 -14.04880 -13.99595 -13.69375 -13.61635 -13.46618 -13.03573 -12.87633 -12.73243 -12.64809 -12.21945 -12.15806 -12.11732 -11.54025 -11.19906 -10.74485 -10.49324 -9.79738 -9.34649 -8.66514 -8.13884 -6.30417 -0.05932 0.48142 1.42779 1.44173 1.51846 1.78228 2.29936 2.48579 2.71033 2.74517 3.14273 3.36275 3.71042 3.80324 4.15606 4.34433 4.47754 4.51986 4.71784 4.76501 4.88906 4.93386 4.96339 5.04811 5.08707 5.19548 5.31258 5.48688 5.60834 5.67413 5.79974 6.03981 6.16619 6.32408 6.73173 6.76747 6.85238 7.29524 7.46150 8.90218 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.005026 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.917917 B = 5569.327383 C = 5708.805631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.077 3.923 14 C 0.549 3.451 15 O -0.600 6.600 16 C -0.237 4.237 17 C -0.008 4.008 18 C -0.212 4.212 19 C 0.161 3.839 20 F -0.137 7.137 21 C -0.242 4.242 22 C 0.280 3.720 23 N -0.853 5.853 24 H 0.047 0.953 25 H 0.020 0.980 26 H 0.067 0.933 27 H 0.264 0.736 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.402 0.598 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -8.751 13.568 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.318 5.318 13 C -0.065 4.065 14 C 0.339 3.661 15 O -0.483 6.483 16 C -0.245 4.245 17 C -0.027 4.027 18 C -0.233 4.233 19 C 0.140 3.860 20 F -0.115 7.115 21 C -0.265 4.265 22 C 0.169 3.831 23 N -0.390 5.390 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.231 0.769 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.468 -8.067 13.348 16.528 hybrid contribution 0.499 0.219 -1.180 1.300 sum 5.968 -7.848 12.168 15.661 Atomic orbital electron populations 1.21873 0.97141 1.00147 0.99958 1.18569 0.91725 0.92290 0.81394 0.96966 1.21511 1.32027 1.13087 0.91036 0.92153 1.25696 0.95043 0.95591 1.01888 1.70014 1.37183 1.23790 1.24483 0.85535 0.78397 0.78967 0.78249 1.18846 1.20989 1.20267 1.48158 1.48463 1.13197 1.21964 1.21992 1.01076 0.80816 1.02658 1.18626 0.78533 0.86241 0.82735 1.90697 1.63013 1.17203 1.77407 1.19446 0.93899 1.09394 1.01807 1.21093 1.00015 0.90262 0.91335 1.20971 0.93508 1.07178 1.01629 1.17599 0.92155 0.91894 0.84324 1.91499 1.87404 1.78416 1.54190 1.20488 1.01833 1.05557 0.98659 1.17416 0.88488 0.88061 0.89152 1.42577 1.13464 1.54481 1.28473 0.93419 0.96136 0.91381 0.92633 0.91088 0.91404 0.89637 0.83176 0.81900 0.82512 0.76865 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.48 2.63 44.25 0.12 13.60 16 3 H 0.01 0.76 6.91 -2.39 -0.02 0.74 16 4 C -0.54 -28.74 8.01 25.60 0.21 -28.54 16 5 H 0.06 3.13 7.28 -2.91 -0.02 3.11 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 8 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.59 -24.80 2.75 -830.80 -2.29 -27.09 16 13 C 0.08 2.45 8.13 127.77 1.04 3.49 16 14 C 0.55 22.92 6.59 86.63 0.57 23.50 16 15 O -0.60 -29.93 15.02 -4.08 -0.06 -29.99 16 16 C -0.24 -7.57 4.87 -19.98 -0.10 -7.67 16 17 C -0.01 -0.20 7.62 22.51 0.17 -0.02 16 18 C -0.21 -4.35 10.00 22.29 0.22 -4.13 16 19 C 0.16 3.53 7.30 22.43 0.16 3.69 16 20 F -0.14 -2.91 17.26 44.97 0.78 -2.13 16 21 C -0.24 -5.51 9.85 22.41 0.22 -5.29 16 22 C 0.28 7.96 6.74 38.70 0.26 8.22 16 23 N -0.85 -23.33 8.88 -50.97 -0.45 -23.78 16 24 H 0.05 2.06 7.67 -2.38 -0.02 2.04 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.07 1.88 7.59 -2.39 -0.02 1.87 16 29 H 0.07 2.32 6.98 -2.39 -0.02 2.30 16 30 H 0.09 2.30 5.71 -2.39 -0.01 2.29 16 31 H 0.15 3.24 6.67 -2.91 -0.02 3.22 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.40 13.47 6.83 -92.71 -0.63 12.83 16 35 H 0.41 8.13 8.84 -92.71 -0.82 7.31 16 Total: -1.00 -66.27 295.25 3.91 -62.36 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.31 Total: 25.56 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 3.97 Total: 2.54 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -2.50 Total: -102.73 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.27 3.91 -62.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.069 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds