Wall clock time and date at job start Mon Mar 30 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46899 * 2 1 4 4 C 1.50694 * 109.47567 * 119.99997 * 2 1 3 5 5 H 1.08000 * 120.00082 * 120.00643 * 4 2 1 6 6 C 1.37883 * 120.00121 * 299.99998 * 4 2 1 7 7 N 1.31515 * 119.99649 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46952 * 60.00467 * 8 6 4 10 10 H 1.48501 * 109.46686 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47375 * 300.00287 * 8 6 4 12 12 N 1.46507 * 109.47196 * 240.00396 * 2 1 3 13 13 C 1.46496 * 119.99459 * 299.99680 * 12 2 1 14 14 C 1.34775 * 120.00176 * 119.99329 * 12 2 1 15 15 O 1.21609 * 119.99806 * 354.99222 * 14 12 2 16 16 C 1.47433 * 119.99910 * 175.26911 * 14 12 2 17 17 C 1.39793 * 120.19205 * 314.45702 * 16 14 12 18 18 C 1.37719 * 119.96043 * 180.02562 * 17 16 14 19 19 C 1.38631 * 120.36687 * 0.02562 * 18 17 16 20 20 C 1.38094 * 120.40085 * 359.97438 * 19 18 17 21 21 F 1.35108 * 119.98308 * 180.02562 * 20 19 18 22 22 C 1.39161 * 120.02573 * 359.72341 * 20 19 18 23 23 N 1.39020 * 120.18174 * 180.30145 * 22 20 19 24 24 H 1.09004 * 109.46875 * 299.99508 * 1 2 3 25 25 H 1.08990 * 109.47745 * 59.99879 * 1 2 3 26 26 H 1.09008 * 109.46453 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99573 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46816 * 267.77064 * 13 12 2 29 29 H 1.08992 * 109.47612 * 27.77283 * 13 12 2 30 30 H 1.09002 * 109.47096 * 147.77794 * 13 12 2 31 31 H 1.07997 * 120.01949 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.81623 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.79741 * 179.97438 * 19 18 17 34 34 H 0.97000 * 119.99831 * 172.00852 * 23 22 20 35 35 H 0.96999 * 120.00074 * 352.00708 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.8066 -1.1208 4.0080 10 1 1.8262 -0.4206 5.2204 11 1 1.8262 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4280 14 6 2.7931 -0.0355 -2.0835 15 8 3.0119 1.1520 -1.9392 16 6 3.3703 -0.7573 -3.2322 17 6 3.9731 -2.0050 -3.0476 18 6 4.5112 -2.6748 -4.1239 19 6 4.4596 -2.1185 -5.3927 20 6 3.8676 -0.8869 -5.5921 21 9 3.8215 -0.3529 -6.8324 22 6 3.3131 -0.1985 -4.5173 23 7 2.7109 1.0387 -4.7155 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0278 0.0005 27 1 0.7083 1.1608 3.4844 28 1 2.4362 -2.7370 -1.0061 29 1 0.7090 -2.3104 -0.9508 30 1 1.5851 -2.2755 -2.4998 31 1 4.0176 -2.4430 -2.0614 32 1 4.9760 -3.6387 -3.9787 33 1 4.8848 -2.6516 -6.2302 34 1 2.2245 1.4629 -3.9913 35 1 2.7771 1.4777 -5.5779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063098463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:45 Heat of formation + Delta-G solvation = -71.823149 kcal Electronic energy + Delta-G solvation = -20328.137893 eV Core-core repulsion = 17046.744991 eV Total energy + Delta-G solvation = -3281.392903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.79463 -41.36317 -39.20672 -37.22433 -35.60800 -34.79103 -32.36548 -30.61211 -29.66856 -27.68820 -27.28318 -25.20117 -23.30459 -22.64907 -20.45186 -18.84076 -18.58771 -18.09672 -18.00279 -17.45872 -16.76501 -16.56861 -16.10333 -16.02944 -15.77909 -15.42188 -14.77625 -14.45776 -14.07852 -13.95661 -13.61836 -13.47725 -13.04563 -12.94384 -12.77417 -12.67061 -12.63434 -12.49443 -12.16276 -12.11552 -11.73134 -11.19127 -10.75030 -10.49305 -9.81039 -9.35046 -8.60919 -8.13331 -6.30229 -0.04540 0.43374 1.43853 1.46012 1.53329 1.79822 2.26727 2.47508 2.72619 2.76855 3.14737 3.27973 3.67868 3.97138 4.05552 4.36420 4.44211 4.58874 4.69792 4.76003 4.87673 4.92581 5.00971 5.04805 5.08553 5.31118 5.44094 5.48052 5.62045 5.66853 5.82557 6.02577 6.15491 6.29374 6.64157 6.76720 6.80545 7.27748 7.45133 8.90729 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.005151 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.493491 B = 5434.660375 C = 5873.975241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.010 0.990 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.589 5.589 13 C 0.084 3.916 14 C 0.547 3.453 15 O -0.600 6.600 16 C -0.205 4.205 17 C -0.046 4.046 18 C -0.147 4.147 19 C -0.072 4.072 20 C -0.008 4.008 21 F -0.146 7.146 22 C 0.222 3.778 23 N -0.857 5.857 24 H 0.069 0.931 25 H 0.018 0.982 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.404 0.596 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -10.021 -14.793 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.028 0.972 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.337 3.663 15 O -0.483 6.483 16 C -0.214 4.214 17 C -0.065 4.065 18 C -0.167 4.167 19 C -0.091 4.091 20 C -0.032 4.032 21 F -0.125 7.125 22 C 0.112 3.888 23 N -0.396 5.396 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.189 0.811 33 H 0.187 0.813 34 H 0.234 0.766 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.173 -9.294 -14.592 17.797 hybrid contribution -0.139 0.815 0.867 1.198 sum 4.034 -8.480 -13.725 16.630 Atomic orbital electron populations 1.21886 0.97166 1.00167 0.99932 1.18584 0.91670 0.92277 0.81475 0.97162 1.21543 1.32028 1.13174 0.90935 0.91802 1.25744 0.95041 0.95620 1.02049 1.70019 1.37261 1.23940 1.24480 0.85493 0.78412 0.79012 0.78006 1.20211 1.21133 1.18573 1.48138 1.48012 1.13472 1.22110 1.21904 1.01684 0.80542 1.01692 1.18645 0.78575 0.86291 0.82819 1.90686 1.63040 1.17408 1.77207 1.19237 1.11894 0.99502 0.90721 1.21455 0.93267 0.90776 1.01026 1.21050 1.03071 1.02304 0.90234 1.21448 0.95805 0.91898 0.99996 1.17156 1.11156 0.96531 0.78333 1.91428 1.95613 1.86491 1.38938 1.17805 0.92225 0.86892 0.91875 1.42437 1.59583 1.19447 1.18135 0.91274 0.96266 0.93298 0.92672 0.91570 0.91023 0.89954 0.84175 0.81056 0.81281 0.76567 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 2 C 0.26 13.59 2.63 44.24 0.12 13.71 16 3 H 0.01 0.65 6.91 -2.38 -0.02 0.63 16 4 C -0.54 -28.87 8.37 25.60 0.21 -28.66 16 5 H 0.06 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.02 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.59 -25.04 2.75 -830.67 -2.29 -27.32 16 13 C 0.08 2.68 8.25 127.77 1.05 3.73 16 14 C 0.55 23.36 6.71 86.67 0.58 23.95 16 15 O -0.60 -30.59 14.77 -4.06 -0.06 -30.65 16 16 C -0.20 -6.72 4.83 -19.99 -0.10 -6.82 16 17 C -0.05 -1.16 7.94 22.52 0.18 -0.98 16 18 C -0.15 -2.61 10.02 22.24 0.22 -2.38 16 19 C -0.07 -1.32 10.00 22.33 0.22 -1.10 16 20 C -0.01 -0.19 7.30 22.46 0.16 -0.03 16 21 F -0.15 -3.56 16.65 44.97 0.75 -2.81 16 22 C 0.22 6.71 6.75 38.71 0.26 6.97 16 23 N -0.86 -25.42 8.81 -50.79 -0.45 -25.86 16 24 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 2.13 6.66 -2.38 -0.02 2.11 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.07 1.89 6.94 -2.38 -0.02 1.87 16 29 H 0.07 2.31 6.43 -2.39 -0.02 2.29 16 30 H 0.08 2.17 6.58 -2.39 -0.02 2.16 16 31 H 0.14 3.37 6.36 -2.91 -0.02 3.35 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.40 13.70 6.75 -92.71 -0.63 13.08 16 35 H 0.41 9.90 8.34 -92.71 -0.77 9.13 16 Total: -1.00 -68.21 293.48 3.99 -64.22 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.25 Total: 26.48 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.01 Total: 3.88 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -2.49 Total: -105.59 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.75 Total: -2.81 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -68.21 3.99 -64.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063098463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.602 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds