Wall clock time and date at job start Mon Mar 30 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47278 * 239.99721 * 2 1 3 5 5 H 1.07992 * 120.00317 * 239.99763 * 4 2 1 6 6 C 1.37879 * 119.99856 * 60.00371 * 4 2 1 7 7 N 1.31515 * 120.00155 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00233 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46693 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47554 * 119.99247 * 8 6 4 11 11 H 1.48504 * 109.46955 * 239.99832 * 8 6 4 12 12 N 1.46498 * 109.47115 * 119.99606 * 2 1 3 13 13 C 1.46503 * 119.99875 * 60.00161 * 12 2 1 14 14 C 1.34771 * 120.00261 * 239.99909 * 12 2 1 15 15 O 1.21604 * 120.00183 * 4.03751 * 14 12 2 16 16 C 1.47441 * 120.00374 * 184.02848 * 14 12 2 17 17 C 1.39787 * 120.19813 * 307.63813 * 16 14 12 18 18 C 1.37711 * 119.96756 * 179.97438 * 17 16 14 19 19 C 1.38633 * 120.36586 * 359.97438 * 18 17 16 20 20 C 1.38090 * 120.40088 * 0.02562 * 19 18 17 21 21 F 1.35097 * 119.98986 * 180.02562 * 20 19 18 22 22 C 1.39163 * 120.02511 * 359.69753 * 20 19 18 23 23 N 1.39017 * 120.18764 * 180.29572 * 22 20 19 24 24 H 1.09000 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47325 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.46647 * 60.00221 * 1 2 3 27 27 H 0.96999 * 120.00674 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47539 * 264.51380 * 13 12 2 29 29 H 1.09005 * 109.47145 * 144.50937 * 13 12 2 30 30 H 1.09006 * 109.46774 * 24.51671 * 13 12 2 31 31 H 1.07999 * 120.01474 * 359.97438 * 17 16 14 32 32 H 1.07999 * 119.81270 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.79832 * 180.02562 * 19 18 17 34 34 H 0.97001 * 120.00233 * 175.07925 * 23 22 20 35 35 H 0.97005 * 119.99546 * 355.08578 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0266 1.1479 1.9294 16 6 3.3578 -0.7538 3.2406 17 6 2.5246 -1.4978 4.0811 18 6 3.0570 -2.1672 5.1604 19 6 4.4177 -2.1087 5.4196 20 6 5.2546 -1.3783 4.5993 21 9 6.5793 -1.3274 4.8594 22 6 4.7350 -0.7002 3.5008 23 7 5.5753 0.0311 2.6691 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7083 1.1609 -3.4844 28 1 0.7930 -2.1449 2.0807 29 1 2.5026 -2.6062 1.8998 30 1 1.4346 -2.5720 0.4762 31 1 1.4639 -1.5475 3.8841 32 1 2.4111 -2.7416 5.8078 33 1 4.8255 -2.6376 6.2684 34 1 5.2230 0.4436 1.8650 35 1 6.5141 0.1288 2.8930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063098464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:57 Heat of formation + Delta-G solvation = -54.044926 kcal Electronic energy + Delta-G solvation = -20356.893117 eV Core-core repulsion = 17076.271136 eV Total energy + Delta-G solvation = -3280.621981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -48.75656 -39.97155 -37.87496 -35.50521 -34.43681 -32.95249 -30.91522 -29.06956 -28.54030 -26.18988 -25.26296 -23.88720 -22.20988 -21.08807 -18.91311 -17.61290 -17.04322 -17.01560 -16.33668 -15.93569 -15.48410 -15.19356 -14.92368 -14.52480 -14.29571 -14.20855 -13.13119 -12.97377 -12.66172 -12.51151 -12.38537 -11.74579 -11.66761 -11.55785 -11.38500 -11.09788 -10.87738 -10.75089 -10.71522 -10.27639 -10.22143 -9.24555 -9.10118 -8.70122 -8.47272 -7.67374 -7.48185 -6.11965 -4.20346 1.06794 1.47884 3.20160 3.22742 3.31219 3.34157 3.67734 3.86330 3.98684 4.33026 4.44326 4.76888 4.97185 5.16315 5.19894 5.30373 5.63291 5.81926 5.93964 5.97099 6.06552 6.24887 6.37804 6.44596 6.72717 6.79010 6.81487 7.02645 7.35257 7.45744 7.48516 7.66754 7.79490 7.97107 8.14343 8.46064 8.76742 8.96576 9.46509 10.93283 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.005405 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386551 B = 5178.819075 C = 5513.220181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.581 5.581 13 C 0.082 3.918 14 C 0.552 3.448 15 O -0.551 6.551 16 C -0.177 4.177 17 C -0.047 4.047 18 C -0.164 4.164 19 C -0.091 4.091 20 C 0.002 3.998 21 F -0.146 7.146 22 C 0.238 3.762 23 N -0.854 5.854 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.415 0.585 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 -7.146 12.877 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.339 3.661 15 O -0.431 6.431 16 C -0.186 4.186 17 C -0.067 4.067 18 C -0.185 4.185 19 C -0.111 4.111 20 C -0.022 4.022 21 F -0.125 7.125 22 C 0.127 3.873 23 N -0.392 5.392 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.247 0.753 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.127 -6.400 12.591 14.715 hybrid contribution 0.736 -0.369 -1.025 1.315 sum 4.864 -6.769 11.566 14.257 Atomic orbital electron populations 1.22081 0.98016 0.99486 1.00891 1.19003 0.91103 0.94508 0.79726 0.91843 1.21347 1.31932 1.13072 0.90205 0.92146 1.24893 0.94908 0.94959 0.98974 1.69888 1.36234 1.22586 1.23722 0.86441 0.78634 0.79590 0.82740 1.19818 1.20873 1.20916 1.48207 1.48168 1.11720 1.22986 1.21727 0.98972 0.83150 1.02371 1.17990 0.79507 0.86585 0.82053 1.90748 1.61283 1.15105 1.75951 1.19496 0.91455 1.06407 1.01230 1.21189 0.99755 0.92770 0.92945 1.20616 0.94124 1.04040 0.99674 1.20961 0.93763 0.97735 0.98617 1.16961 0.78170 1.07590 0.99463 1.91423 1.31372 1.95746 1.93912 1.17581 0.89819 0.90533 0.89319 1.42446 1.11219 1.57596 1.27980 0.95079 0.96913 0.88803 0.92683 0.93780 0.92488 0.89942 0.84887 0.85114 0.84923 0.75300 0.77123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.26 6.42 2.63 -69.08 -0.18 6.23 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.90 7.95 -34.44 -0.27 -14.17 16 5 H 0.06 1.58 7.43 -52.49 -0.39 1.19 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.58 -12.21 2.75 -176.52 -0.49 -12.69 16 13 C 0.08 1.37 8.07 59.85 0.48 1.85 16 14 C 0.55 11.47 6.50 -12.51 -0.08 11.39 16 15 O -0.55 -13.32 15.20 5.27 0.08 -13.24 16 16 C -0.18 -2.97 4.77 -104.81 -0.50 -3.47 16 17 C -0.05 -0.64 7.91 -39.20 -0.31 -0.95 16 18 C -0.16 -1.81 10.02 -39.63 -0.40 -2.21 16 19 C -0.09 -1.05 10.00 -39.49 -0.40 -1.45 16 20 C 0.00 0.03 7.30 -39.29 -0.29 -0.26 16 21 F -0.15 -1.99 16.64 2.25 0.04 -1.95 16 22 C 0.24 3.78 6.76 -83.50 -0.56 3.21 16 23 N -0.85 -13.05 8.90 32.60 0.29 -12.76 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.04 0.63 7.18 -51.93 -0.37 0.26 16 29 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 30 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 31 H 0.13 1.62 6.65 -52.49 -0.35 1.28 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.41 7.13 6.93 -40.82 -0.28 6.84 16 35 H 0.40 5.05 8.32 -40.82 -0.34 4.71 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -30.04 295.13 -6.21 -36.25 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.91 Total: 9.57 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.27 Total: -1.28 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.43 Total: -49.46 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.04 -6.21 -36.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063098464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.794 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds