Wall clock time and date at job start Mon Mar 30 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47278 * 239.99721 * 2 1 3 5 5 H 1.07992 * 120.00317 * 239.99763 * 4 2 1 6 6 C 1.37879 * 119.99856 * 60.00371 * 4 2 1 7 7 N 1.31515 * 120.00155 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00233 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46693 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47554 * 119.99247 * 8 6 4 11 11 H 1.48504 * 109.46955 * 239.99832 * 8 6 4 12 12 N 1.46498 * 109.47115 * 119.99606 * 2 1 3 13 13 C 1.46503 * 119.99875 * 60.00161 * 12 2 1 14 14 C 1.34771 * 120.00261 * 239.99909 * 12 2 1 15 15 O 1.21604 * 120.00183 * 4.03751 * 14 12 2 16 16 C 1.47441 * 120.00374 * 184.02848 * 14 12 2 17 17 C 1.39787 * 120.19813 * 307.63813 * 16 14 12 18 18 C 1.37711 * 119.96756 * 179.97438 * 17 16 14 19 19 C 1.38633 * 120.36586 * 359.97438 * 18 17 16 20 20 C 1.38090 * 120.40088 * 0.02562 * 19 18 17 21 21 F 1.35097 * 119.98986 * 180.02562 * 20 19 18 22 22 C 1.39163 * 120.02511 * 359.69753 * 20 19 18 23 23 N 1.39017 * 120.18764 * 180.29572 * 22 20 19 24 24 H 1.09000 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47325 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.46647 * 60.00221 * 1 2 3 27 27 H 0.96999 * 120.00674 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47539 * 264.51380 * 13 12 2 29 29 H 1.09005 * 109.47145 * 144.50937 * 13 12 2 30 30 H 1.09006 * 109.46774 * 24.51671 * 13 12 2 31 31 H 1.07999 * 120.01474 * 359.97438 * 17 16 14 32 32 H 1.07999 * 119.81270 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.79832 * 180.02562 * 19 18 17 34 34 H 0.97001 * 120.00233 * 175.07925 * 23 22 20 35 35 H 0.97005 * 119.99546 * 355.08578 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0266 1.1479 1.9294 16 6 3.3578 -0.7538 3.2406 17 6 2.5246 -1.4978 4.0811 18 6 3.0570 -2.1672 5.1604 19 6 4.4177 -2.1087 5.4196 20 6 5.2546 -1.3783 4.5993 21 9 6.5793 -1.3274 4.8594 22 6 4.7350 -0.7002 3.5008 23 7 5.5753 0.0311 2.6691 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7083 1.1609 -3.4844 28 1 0.7930 -2.1449 2.0807 29 1 2.5026 -2.6062 1.8998 30 1 1.4346 -2.5720 0.4762 31 1 1.4639 -1.5475 3.8841 32 1 2.4111 -2.7416 5.8078 33 1 4.8255 -2.6376 6.2684 34 1 5.2230 0.4436 1.8650 35 1 6.5141 0.1288 2.8930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063098464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:53 Heat of formation + Delta-G solvation = -73.766384 kcal Electronic energy + Delta-G solvation = -20357.748304 eV Core-core repulsion = 17076.271136 eV Total energy + Delta-G solvation = -3281.477168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.80059 -41.35109 -39.21401 -37.19847 -35.62995 -34.80633 -32.35123 -30.64171 -29.66315 -27.64686 -27.30757 -25.19284 -23.33531 -22.64236 -20.43779 -18.84313 -18.54909 -18.20680 -18.00551 -17.48634 -16.78992 -16.56909 -16.06833 -16.03979 -15.75723 -15.41662 -14.74917 -14.41733 -14.03963 -13.92218 -13.67216 -13.51510 -13.07696 -12.94971 -12.77516 -12.68644 -12.62568 -12.51447 -12.20583 -12.11631 -11.74763 -11.19545 -10.75858 -10.51857 -9.79280 -9.35983 -8.60687 -8.15902 -6.32302 -0.00651 0.44537 1.40032 1.41907 1.52808 1.74643 2.27328 2.45500 2.72191 2.75428 3.12384 3.28845 3.67260 3.97734 4.05081 4.37547 4.47226 4.58547 4.71941 4.76949 4.89982 4.95271 5.01179 5.06477 5.08396 5.32216 5.44350 5.48326 5.59860 5.66038 5.83006 6.02293 6.15087 6.27438 6.61680 6.75307 6.79330 7.26637 7.43597 8.88690 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.005405 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386551 B = 5178.819075 C = 5513.220181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.588 5.588 13 C 0.080 3.920 14 C 0.548 3.452 15 O -0.600 6.600 16 C -0.203 4.203 17 C -0.046 4.046 18 C -0.145 4.145 19 C -0.075 4.075 20 C -0.008 4.008 21 F -0.147 7.147 22 C 0.217 3.783 23 N -0.860 5.860 24 H 0.048 0.952 25 H 0.020 0.980 26 H 0.067 0.933 27 H 0.265 0.735 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.402 0.598 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -10.014 14.801 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.316 5.316 13 C -0.062 4.062 14 C 0.337 3.663 15 O -0.483 6.483 16 C -0.212 4.212 17 C -0.065 4.065 18 C -0.165 4.165 19 C -0.094 4.094 20 C -0.032 4.032 21 F -0.126 7.126 22 C 0.107 3.893 23 N -0.398 5.398 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.192 0.808 33 H 0.187 0.813 34 H 0.232 0.768 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.031 -9.318 14.554 17.746 hybrid contribution 0.784 0.515 -1.517 1.783 sum 4.816 -8.803 13.038 16.452 Atomic orbital electron populations 1.21870 0.96927 1.00259 0.99998 1.18598 0.91865 0.92247 0.81374 0.97115 1.21565 1.31900 1.13014 0.91028 0.92205 1.25704 0.95056 0.95606 1.01920 1.70026 1.37214 1.23854 1.24396 0.85420 0.78227 0.78451 0.78980 1.19069 1.19924 1.21183 1.48162 1.48343 1.13280 1.21844 1.21937 1.01057 0.80547 1.02636 1.18640 0.78624 0.86211 0.82824 1.90705 1.62739 1.17485 1.77373 1.19240 0.92285 1.08672 1.00994 1.21417 1.00049 0.92056 0.92954 1.21069 0.94356 1.02498 0.98566 1.21449 0.93695 0.95890 0.98387 1.17166 0.78543 1.08079 0.99419 1.91420 1.31523 1.95812 1.93842 1.17844 0.89758 0.91382 0.90300 1.42436 1.11798 1.57874 1.27692 0.93263 0.96055 0.91388 0.92609 0.90673 0.90421 0.91072 0.83593 0.80795 0.81342 0.76804 0.76123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.97 71.98 0.65 -5.67 16 2 C 0.26 13.52 2.63 44.25 0.12 13.63 16 3 H 0.01 0.67 6.90 -2.39 -0.02 0.66 16 4 C -0.54 -28.89 7.95 25.60 0.20 -28.68 16 5 H 0.06 3.15 7.43 -2.91 -0.02 3.13 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 8 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.59 -24.96 2.75 -830.65 -2.29 -27.24 16 13 C 0.08 2.56 8.07 127.77 1.03 3.59 16 14 C 0.55 23.37 6.50 86.67 0.56 23.93 16 15 O -0.60 -30.76 15.20 -4.04 -0.06 -30.82 16 16 C -0.20 -6.66 4.77 -19.99 -0.10 -6.76 16 17 C -0.05 -1.08 7.91 22.52 0.18 -0.90 16 18 C -0.15 -2.45 10.02 22.24 0.22 -2.23 16 19 C -0.08 -1.38 10.00 22.33 0.22 -1.16 16 20 C -0.01 -0.21 7.30 22.46 0.16 -0.04 16 21 F -0.15 -3.75 16.64 44.97 0.75 -3.00 16 22 C 0.22 6.78 6.76 38.72 0.26 7.04 16 23 N -0.86 -27.19 8.90 -50.78 -0.45 -27.64 16 24 H 0.05 2.11 7.67 -2.39 -0.02 2.10 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.07 1.91 7.18 -2.39 -0.02 1.90 16 29 H 0.08 2.14 6.46 -2.38 -0.02 2.13 16 30 H 0.07 2.43 7.11 -2.38 -0.02 2.41 16 31 H 0.15 3.02 6.65 -2.91 -0.02 3.00 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.40 14.78 6.93 -92.71 -0.64 14.13 16 35 H 0.41 10.68 8.32 -92.70 -0.77 9.91 16 Total: -1.00 -68.70 295.13 3.91 -64.79 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.27 Total: 27.16 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 3.96 Total: 4.12 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -2.50 Total: -107.00 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.06 Total: -30.82 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.75 Total: -3.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.70 3.91 -64.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063098464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.977 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds