Wall clock time and date at job start Mon Mar 30 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 O 1.21293 * 120.00365 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99729 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00063 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00043 * 359.97438 * 7 6 4 9 9 C 1.38944 * 120.00370 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99973 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00319 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 60.00134 * 11 9 7 13 13 H 1.48501 * 109.47187 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47257 * 299.99661 * 11 9 7 15 15 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 16 16 C 1.50694 * 109.47330 * 293.95439 * 15 2 1 17 17 C 1.38246 * 119.97430 * 269.72725 * 16 15 2 18 18 C 1.38201 * 120.02159 * 179.72334 * 17 16 15 19 19 C 1.38455 * 119.97695 * 0.57351 * 18 17 16 20 20 F 1.35098 * 120.02578 * 179.68154 * 19 18 17 21 21 C 1.38460 * 119.95163 * 359.70011 * 19 18 17 22 22 C 1.38204 * 119.96908 * 0.02562 * 21 19 18 23 23 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 24 24 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 25 25 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 26 26 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 27 27 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 28 28 H 0.96997 * 120.00358 * 0.02562 * 6 4 3 29 29 H 0.97005 * 120.00480 * 180.02562 * 10 9 7 30 30 H 1.09009 * 109.47296 * 53.95365 * 15 2 1 31 31 H 1.09002 * 109.47055 * 173.95064 * 15 2 1 32 32 H 1.07997 * 119.98629 * 359.97438 * 17 16 15 33 33 H 1.08004 * 120.01174 * 180.25012 * 18 17 16 34 34 H 1.07992 * 120.01761 * 179.97438 * 21 19 18 35 35 H 1.07996 * 119.98294 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0189 3.3199 1.5237 7 6 1.6932 3.9344 2.7051 8 1 1.1302 3.3988 3.4551 9 6 2.0865 5.2467 2.9371 10 7 2.7711 5.8986 2.0244 11 14 1.6421 6.0843 4.5466 12 1 2.2338 5.3270 5.6787 13 1 2.1737 7.4709 4.5463 14 1 0.1649 6.1212 4.6940 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 2.4970 -3.0724 -0.3054 18 6 2.1665 -4.4052 -0.1488 19 6 0.9792 -4.8895 -0.6710 20 9 0.6582 -6.1935 -0.5241 21 6 0.1212 -4.0364 -1.3442 22 6 0.4511 -2.7028 -1.4947 23 1 -0.3634 -1.0251 0.0708 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5612 1.9274 -0.8310 28 1 2.5243 3.8011 0.8499 29 1 3.0461 6.8147 2.1865 30 1 1.5611 -0.3872 -2.0629 31 1 3.0797 -0.6611 -1.1757 32 1 3.4255 -2.6955 0.0973 33 1 2.8367 -5.0698 0.3762 34 1 -0.8050 -4.4131 -1.7523 35 1 -0.2182 -2.0371 -2.0194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066472637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:40 Heat of formation + Delta-G solvation = -48.729523 kcal Electronic energy + Delta-G solvation = -19236.090523 eV Core-core repulsion = 15955.699035 eV Total energy + Delta-G solvation = -3280.391488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.98320 -39.53505 -38.36552 -36.18053 -33.86281 -31.40778 -31.27238 -31.14680 -27.80182 -26.75946 -24.69411 -23.13745 -22.59376 -20.92299 -19.16296 -17.84551 -17.74453 -16.49432 -16.28328 -15.74401 -15.54640 -15.20813 -14.74089 -14.56240 -14.06359 -13.86027 -13.70088 -13.58620 -13.21809 -13.17420 -12.25556 -12.08906 -11.81156 -11.62165 -11.45170 -11.28567 -11.12460 -11.03444 -10.91409 -10.43801 -10.21178 -9.46597 -9.18649 -8.70320 -8.45710 -7.97341 -7.84446 -6.41434 -3.82238 1.02675 1.14529 3.20343 3.25990 3.30194 3.42210 3.91005 4.11185 4.16271 4.32568 4.59475 4.71209 4.80106 5.01775 5.15246 5.18161 5.25318 5.47514 5.50114 5.71513 5.71721 5.81536 5.91748 5.96134 5.97712 6.01176 6.14336 6.28177 6.46403 6.56141 6.78892 7.25378 7.35490 7.55384 8.06628 8.62404 9.18561 9.54855 10.06969 10.76282 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046095 B = 0.003288 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.299919 B = 8513.188944 C = 8668.074638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.102 0.898 9 C 0.023 3.977 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.090 3.910 16 C -0.078 4.078 17 C -0.068 4.068 18 C -0.154 4.154 19 C 0.091 3.909 20 F -0.144 7.144 21 C -0.156 4.156 22 C -0.084 4.084 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.014 0.986 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.392 0.608 29 H 0.272 0.728 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -14.684 -10.018 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.237 5.237 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.201 5.201 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.038 4.038 16 C -0.079 4.079 17 C -0.086 4.086 18 C -0.173 4.173 19 C 0.071 3.929 20 F -0.123 7.123 21 C -0.175 4.175 22 C -0.103 4.103 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.032 0.968 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.225 0.775 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.917 -15.143 -9.004 17.641 hybrid contribution -0.198 0.940 -0.348 1.022 sum -1.115 -14.203 -9.352 17.042 Atomic orbital electron populations 1.22610 0.86701 1.02180 1.01365 1.61598 1.08884 1.12671 1.40552 1.21883 1.00710 0.88732 0.97246 1.19721 0.85482 0.82931 0.88945 1.90492 1.43876 1.64616 1.47083 1.41856 1.49460 1.10773 1.18024 1.19650 1.32990 0.95465 0.94773 0.87972 1.25250 0.96814 0.96629 0.99209 1.69603 1.38046 1.12304 1.34469 0.85924 0.78903 0.77914 0.81518 1.19874 1.20999 1.19932 1.21105 1.00736 0.89484 0.92436 1.19843 0.94576 0.95610 0.97862 1.20936 0.99856 0.91767 0.96072 1.21144 0.96509 0.97055 1.02616 1.17725 0.95701 0.78320 1.01119 1.91481 1.92895 1.33790 1.94147 1.21074 1.00375 0.93973 1.02042 1.20948 0.96153 0.94359 0.98823 0.91930 0.88565 0.96775 0.89308 0.93381 0.77500 0.91835 0.93988 0.89744 0.84731 0.84849 0.84971 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.78 60.07 0.53 0.84 16 2 N -0.51 -8.36 4.49 -245.82 -1.10 -9.46 16 3 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 4 C 0.44 10.34 7.47 -10.99 -0.08 10.26 16 5 O -0.58 -15.43 13.91 5.55 0.08 -15.36 16 6 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 11 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 15 C 0.09 1.10 5.12 -4.98 -0.03 1.08 16 16 C -0.08 -0.92 4.88 -104.62 -0.51 -1.43 16 17 C -0.07 -0.77 9.70 -39.59 -0.38 -1.15 16 18 C -0.15 -1.70 10.03 -39.52 -0.40 -2.10 16 19 C 0.09 1.05 7.30 -39.42 -0.29 0.76 16 20 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 21 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 22 C -0.08 -0.91 7.96 -39.59 -0.32 -1.22 16 23 H 0.06 0.93 6.17 -51.93 -0.32 0.61 16 24 H 0.10 1.91 5.83 -51.93 -0.30 1.61 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 27 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.04 0.46 8.06 -51.92 -0.42 0.04 16 31 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.20 8.03 -52.49 -0.42 0.77 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -30.92 304.47 -7.12 -38.05 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.23 Total: 8.03 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.14 Total: -2.20 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.44 Total: -47.37 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.36 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.92 -7.12 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.681 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds