Wall clock time and date at job start Mon Mar 30 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 O 1.21293 * 120.00365 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99729 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00063 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00043 * 359.97438 * 7 6 4 9 9 C 1.38944 * 120.00370 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99973 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00319 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 60.00134 * 11 9 7 13 13 H 1.48501 * 109.47187 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47257 * 299.99661 * 11 9 7 15 15 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 16 16 C 1.50694 * 109.47330 * 293.95439 * 15 2 1 17 17 C 1.38246 * 119.97430 * 269.72725 * 16 15 2 18 18 C 1.38201 * 120.02159 * 179.72334 * 17 16 15 19 19 C 1.38455 * 119.97695 * 0.57351 * 18 17 16 20 20 F 1.35098 * 120.02578 * 179.68154 * 19 18 17 21 21 C 1.38460 * 119.95163 * 359.70011 * 19 18 17 22 22 C 1.38204 * 119.96908 * 0.02562 * 21 19 18 23 23 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 24 24 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 25 25 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 26 26 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 27 27 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 28 28 H 0.96997 * 120.00358 * 0.02562 * 6 4 3 29 29 H 0.97005 * 120.00480 * 180.02562 * 10 9 7 30 30 H 1.09009 * 109.47296 * 53.95365 * 15 2 1 31 31 H 1.09002 * 109.47055 * 173.95064 * 15 2 1 32 32 H 1.07997 * 119.98629 * 359.97438 * 17 16 15 33 33 H 1.08004 * 120.01174 * 180.25012 * 18 17 16 34 34 H 1.07992 * 120.01761 * 179.97438 * 21 19 18 35 35 H 1.07996 * 119.98294 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0189 3.3199 1.5237 7 6 1.6932 3.9344 2.7051 8 1 1.1302 3.3988 3.4551 9 6 2.0865 5.2467 2.9371 10 7 2.7711 5.8986 2.0244 11 14 1.6421 6.0843 4.5466 12 1 2.2338 5.3270 5.6787 13 1 2.1737 7.4709 4.5463 14 1 0.1649 6.1212 4.6940 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 6 2.4970 -3.0724 -0.3054 18 6 2.1665 -4.4052 -0.1488 19 6 0.9792 -4.8895 -0.6710 20 9 0.6582 -6.1935 -0.5241 21 6 0.1212 -4.0364 -1.3442 22 6 0.4511 -2.7028 -1.4947 23 1 -0.3634 -1.0251 0.0708 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5612 1.9274 -0.8310 28 1 2.5243 3.8011 0.8499 29 1 3.0461 6.8147 2.1865 30 1 1.5611 -0.3872 -2.0629 31 1 3.0797 -0.6611 -1.1757 32 1 3.4255 -2.6955 0.0973 33 1 2.8367 -5.0698 0.3762 34 1 -0.8050 -4.4131 -1.7523 35 1 -0.2182 -2.0371 -2.0194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066472637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:39 Heat of formation + Delta-G solvation = -69.202916 kcal Electronic energy + Delta-G solvation = -19236.978316 eV Core-core repulsion = 15955.699035 eV Total energy + Delta-G solvation = -3281.279281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88002 -40.62311 -39.90990 -37.50801 -35.83392 -33.26175 -32.31597 -32.07686 -29.27686 -27.85867 -26.50201 -24.04005 -23.74657 -21.90637 -20.95055 -19.83174 -18.60735 -17.86623 -17.36230 -16.83531 -16.66112 -16.48220 -16.31744 -16.03780 -15.49852 -15.17641 -15.09461 -14.58429 -14.43816 -14.22006 -13.73191 -13.47398 -13.13955 -13.01007 -12.78948 -12.64676 -12.47215 -12.40356 -12.24688 -12.10685 -11.86105 -11.43260 -10.26271 -10.00842 -9.96841 -9.60214 -9.12514 -8.44321 -5.92643 0.15272 0.32594 1.40926 1.42678 1.53279 2.09490 2.29520 2.51641 3.04017 3.22951 3.31988 3.48715 3.79255 3.82767 4.01363 4.24226 4.28319 4.37731 4.41013 4.55709 4.56589 4.62496 4.74763 4.79612 5.02401 5.07010 5.18504 5.21758 5.30003 5.43051 5.60583 5.89454 5.96818 6.09977 6.22407 6.64137 7.16076 7.60329 8.16814 8.72859 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046095 B = 0.003288 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.299919 B = 8513.188944 C = 8668.074638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.534 5.534 3 C 0.058 3.942 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.575 5.575 7 C -0.333 4.333 8 H 0.078 0.922 9 C -0.012 4.012 10 N -0.921 5.921 11 Si 0.991 3.009 12 H -0.273 1.273 13 H -0.271 1.271 14 H -0.272 1.272 15 C 0.093 3.907 16 C -0.090 4.090 17 C -0.077 4.077 18 C -0.160 4.160 19 C 0.075 3.925 20 F -0.150 7.150 21 C -0.157 4.157 22 C -0.086 4.086 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.396 0.604 29 H 0.277 0.723 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -14.788 -11.086 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.073 4.073 4 C 0.228 3.772 5 O -0.502 6.502 6 N -0.213 5.213 7 C -0.462 4.462 8 H 0.096 0.904 9 C -0.212 4.212 10 N -0.562 5.562 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.033 4.033 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.178 4.178 19 C 0.055 3.945 20 F -0.129 7.129 21 C -0.176 4.176 22 C -0.104 4.104 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.645 -15.254 -10.102 18.308 hybrid contribution -0.293 0.878 -0.047 0.927 sum -0.938 -14.376 -10.150 17.623 Atomic orbital electron populations 1.22442 0.87078 1.02232 1.00408 1.61515 1.08830 1.12176 1.43351 1.21755 1.02341 0.89267 0.93918 1.20836 0.83622 0.82174 0.90533 1.90472 1.45180 1.65380 1.49148 1.41925 1.50145 1.11636 1.17563 1.19609 1.34401 0.96418 0.95796 0.90432 1.25991 0.96312 0.96614 1.02266 1.69661 1.38156 1.12683 1.35713 0.85025 0.78596 0.77314 0.77629 1.19795 1.19519 1.19775 1.21163 1.01615 0.88973 0.91554 1.19940 0.95188 0.95495 0.98488 1.21117 1.00340 0.91932 0.96133 1.21340 0.96658 0.97309 1.02527 1.17978 0.96342 0.78314 1.01839 1.91464 1.92977 1.34214 1.94266 1.21316 1.00861 0.93905 1.01511 1.21158 0.96044 0.94631 0.98577 0.90844 0.92921 0.94692 0.86820 0.91127 0.76988 0.91341 0.92015 0.88268 0.83914 0.83509 0.83183 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.78 127.69 1.12 1.94 16 2 N -0.53 -16.38 4.49 -931.63 -4.18 -20.56 16 3 C 0.06 1.91 5.45 85.55 0.47 2.37 16 4 C 0.44 20.64 7.47 87.66 0.66 21.29 16 5 O -0.62 -33.79 13.91 -3.07 -0.04 -33.83 16 6 N -0.57 -29.16 5.29 -306.99 -1.62 -30.78 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 10 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 11 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.09 2.01 5.12 85.56 0.44 2.44 16 16 C -0.09 -1.93 4.88 -19.86 -0.10 -2.03 16 17 C -0.08 -1.62 9.70 22.26 0.22 -1.40 16 18 C -0.16 -3.31 10.03 22.31 0.22 -3.08 16 19 C 0.07 1.63 7.30 22.37 0.16 1.80 16 20 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 21 C -0.16 -3.05 10.03 22.31 0.22 -2.82 16 22 C -0.09 -1.64 7.96 22.26 0.18 -1.46 16 23 H 0.07 2.07 6.17 -2.39 -0.01 2.06 16 24 H 0.05 2.12 5.83 -2.38 -0.01 2.10 16 25 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 3.19 7.93 -2.39 -0.02 3.17 16 27 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 28 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 29 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 30 H 0.06 1.11 8.06 -2.38 -0.02 1.09 16 31 H 0.10 1.83 7.87 -2.39 -0.02 1.82 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.25 8.03 -2.91 -0.02 2.22 16 Total: -1.00 -67.17 304.47 2.48 -64.69 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.38 Total: 26.59 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 4.87 Total: 0.86 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.52 Total: -100.48 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.04 Total: -33.83 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.17 2.48 -64.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.515 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds