Wall clock time and date at job start Mon Mar 30 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00441 * 2 1 4 4 H 1.48502 * 109.46858 * 271.97835 * 3 2 1 5 5 H 1.48494 * 109.47008 * 31.97262 * 3 2 1 6 6 H 1.48496 * 109.47403 * 151.97706 * 3 2 1 7 7 C 1.38817 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00073 * 339.44597 * 7 2 1 9 9 N 1.36942 * 120.00021 * 159.44212 * 7 2 1 10 10 C 1.47076 * 120.88004 * 333.51114 * 9 7 2 11 11 C 1.53243 * 108.52033 * 231.15900 * 10 9 7 12 12 N 1.46896 * 109.34093 * 306.17439 * 11 10 9 13 13 C 1.46904 * 110.99768 * 187.25298 * 12 11 10 14 14 C 1.53001 * 109.46651 * 170.00089 * 13 12 11 15 15 C 1.50704 * 109.46724 * 179.97438 * 14 13 12 16 16 C 1.38424 * 122.54137 * 89.99909 * 15 14 13 17 17 C 1.33388 * 114.92401 * 179.97438 * 16 15 14 18 18 S 1.75887 * 109.59131 * 359.97438 * 17 16 15 19 19 C 1.33390 * 122.54007 * 269.70390 * 15 14 13 20 20 C 1.46904 * 111.27088 * 63.10182 * 12 11 10 21 21 C 1.47081 * 120.87856 * 153.48641 * 9 7 2 22 22 H 0.97000 * 119.99553 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.62779 * 111.45383 * 10 9 7 24 24 H 1.08999 * 109.79098 * 350.96409 * 10 9 7 25 25 H 1.08999 * 109.49525 * 186.21171 * 11 10 9 26 26 H 1.09000 * 109.48927 * 66.13475 * 11 10 9 27 27 H 1.09001 * 109.46969 * 289.99364 * 13 12 11 28 28 H 1.08998 * 109.47421 * 49.99871 * 13 12 11 29 29 H 1.09001 * 109.46842 * 299.99353 * 14 13 12 30 30 H 1.08996 * 109.47500 * 60.00296 * 14 13 12 31 31 H 1.08004 * 122.54079 * 359.97438 * 16 15 14 32 32 H 1.08003 * 125.20747 * 179.97438 * 17 16 15 33 33 H 1.08004 * 125.20026 * 0.03140 * 19 15 14 34 34 H 1.08998 * 109.48800 * 56.85788 * 20 12 11 35 35 H 1.08995 * 109.48703 * 176.93484 * 20 12 11 36 36 H 1.08999 * 109.62420 * 248.54761 * 21 9 7 37 37 H 1.08998 * 109.62933 * 9.13239 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4559 2.0705 -1.3993 5 1 1.4693 2.6402 0.7413 6 1 3.5681 1.4284 0.6578 7 6 2.0102 -1.2022 0.0005 8 1 1.5217 -2.1076 0.3293 9 7 3.3142 -1.2402 -0.4159 10 6 3.8307 -0.2486 -1.3714 11 6 4.5272 -0.9923 -2.5160 12 7 5.5362 -1.9042 -1.9608 13 6 6.3438 -2.5086 -3.0287 14 6 7.5324 -3.2490 -2.4122 15 6 8.3606 -3.8696 -3.5077 16 6 9.4106 -3.2032 -4.1157 17 6 10.0404 -3.8953 -5.0663 18 16 9.2970 -5.4807 -5.2321 19 6 8.1411 -5.1048 -3.9609 20 6 4.9160 -2.9375 -1.1208 21 6 4.2355 -2.2735 0.0810 22 1 -0.4849 0.8401 -0.0004 23 1 4.5454 0.4047 -0.8707 24 1 3.0073 0.3454 -1.7681 25 1 5.0113 -0.2725 -3.1761 26 1 3.7903 -1.5647 -3.0794 27 1 5.7316 -3.2114 -3.5938 28 1 6.7086 -1.7270 -3.6951 29 1 8.1447 -2.5462 -1.8471 30 1 7.1676 -4.0307 -1.7459 31 1 9.6980 -2.1990 -3.8413 32 1 10.8786 -3.5370 -5.6455 33 1 7.3704 -5.7715 -3.6031 34 1 4.1737 -3.4828 -1.7037 35 1 5.6821 -3.6284 -0.7691 36 1 4.9890 -1.8149 0.7212 37 1 3.6775 -3.0210 0.6449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070246526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:01 Heat of formation + Delta-G solvation = 68.229896 kcal Electronic energy + Delta-G solvation = -17920.921571 eV Core-core repulsion = 15211.815000 eV Total energy + Delta-G solvation = -2709.106571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.96889 -37.93629 -34.81017 -32.04016 -31.02683 -30.33911 -28.71248 -26.36830 -23.87964 -23.44512 -22.35028 -21.41293 -19.38064 -18.83512 -17.73368 -16.81597 -15.74785 -15.43253 -14.74238 -14.34106 -14.23325 -13.97770 -13.91176 -13.25326 -13.16652 -12.95915 -12.51495 -12.39160 -12.20619 -11.89124 -11.64220 -11.56747 -11.04086 -10.90007 -10.80928 -10.46540 -10.27980 -10.03594 -9.78581 -9.43807 -8.97013 -8.65038 -8.51081 -7.96609 -6.93499 -5.92728 -3.27649 0.83899 1.49561 1.81421 2.54247 3.34398 3.51115 3.56022 4.22122 4.55882 4.73764 4.95642 4.99639 5.06421 5.29581 5.30074 5.37445 5.41161 5.63945 5.71144 5.75874 5.78941 5.90074 6.00327 6.06177 6.08524 6.11933 6.22839 6.29873 6.42193 6.45010 6.60447 6.67879 6.90962 7.46261 7.50166 7.96830 8.34621 8.95585 9.74237 10.14003 11.23419 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049117 B = 0.003703 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.925197 B = 7559.042204 C = 7792.330817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.535 5.535 13 C 0.063 3.937 14 C -0.058 4.058 15 C -0.094 4.094 16 C -0.127 4.127 17 C -0.214 4.214 18 S 0.078 5.922 19 C -0.210 4.210 20 C 0.039 3.961 21 C 0.152 3.848 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.476 -8.476 -9.509 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.085 4.085 12 N -0.260 5.260 13 C -0.066 4.066 14 C -0.098 4.098 15 C -0.106 4.106 16 C -0.157 4.157 17 C -0.349 4.349 18 S 0.341 5.659 19 C -0.346 4.346 20 C -0.090 4.090 21 C 0.026 3.974 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.882 -9.388 -10.123 24.206 hybrid contribution -0.370 1.704 0.238 1.760 sum 19.513 -7.684 -9.885 23.184 Atomic orbital electron populations 1.69838 1.05732 1.26533 1.53281 1.25264 0.95246 0.97627 0.99620 0.86936 0.80003 0.84502 0.77076 1.21632 1.23206 1.19434 1.18941 0.84830 0.94811 1.40109 0.89710 1.44415 1.08507 1.32273 1.48136 1.21423 0.96472 0.91966 0.89702 1.22621 0.92805 0.95481 0.97611 1.61928 1.24398 1.18948 1.20753 1.22035 0.93861 0.97424 0.93284 1.20364 0.95428 0.99474 0.94582 1.19020 0.97766 0.93881 0.99972 1.20173 0.96598 1.01556 0.97396 1.25578 1.06266 0.97897 1.05164 1.84232 1.28046 1.16159 1.37439 1.25493 1.05274 1.00822 1.02966 1.22693 0.96740 0.93271 0.96339 1.21008 0.92029 0.91558 0.92852 0.92801 0.94971 0.90801 0.91707 0.94707 0.95264 0.91160 0.89988 0.90792 0.84104 0.82008 0.81971 0.95012 0.91355 0.95201 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.23 13.97 55.49 0.78 -27.46 16 2 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 22.72 24.31 -169.99 -4.13 18.59 16 4 H -0.29 -7.11 6.58 56.52 0.37 -6.74 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.86 6.61 56.52 0.37 -6.49 16 7 C -0.26 -7.36 10.08 -15.05 -0.15 -7.51 16 8 H 0.09 2.56 8.05 -52.49 -0.42 2.13 16 9 N -0.61 -14.88 2.82 -172.01 -0.48 -15.37 16 10 C 0.13 2.93 4.35 -3.60 -0.02 2.91 16 11 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 12 N -0.54 -8.90 4.63 -234.32 -1.08 -9.99 16 13 C 0.06 0.84 4.94 -3.82 -0.02 0.82 16 14 C -0.06 -0.66 5.40 -27.88 -0.15 -0.81 16 15 C -0.09 -1.00 5.06 -106.25 -0.54 -1.54 16 16 C -0.13 -1.24 9.98 -41.21 -0.41 -1.65 16 17 C -0.21 -1.89 11.23 29.04 0.33 -1.57 16 18 S 0.08 0.71 23.34 -107.50 -2.51 -1.80 16 19 C -0.21 -2.13 10.98 29.04 0.32 -1.81 16 20 C 0.04 0.65 5.46 -3.70 -0.02 0.63 16 21 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.03 0.73 6.94 -51.92 -0.36 0.37 16 24 H 0.07 1.80 4.61 -51.93 -0.24 1.56 16 25 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 29 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.07 0.83 6.38 -51.93 -0.33 0.50 16 31 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.97 6.16 -51.93 -0.32 0.65 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.27 7.95 -51.93 -0.41 0.85 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -31.10 303.61 -9.15 -40.24 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.49 Total: -2.63 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.80 Total: -6.16 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.79 Total: -52.82 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.13 Total: 18.59 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.10 -9.15 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070246526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.474 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds