Wall clock time and date at job start Mon Mar 30 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00441 * 2 1 4 4 H 1.48502 * 109.46858 * 271.97835 * 3 2 1 5 5 H 1.48494 * 109.47008 * 31.97262 * 3 2 1 6 6 H 1.48496 * 109.47403 * 151.97706 * 3 2 1 7 7 C 1.38817 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00073 * 339.44597 * 7 2 1 9 9 N 1.36942 * 120.00021 * 159.44212 * 7 2 1 10 10 C 1.47076 * 120.88004 * 333.51114 * 9 7 2 11 11 C 1.53243 * 108.52033 * 231.15900 * 10 9 7 12 12 N 1.46896 * 109.34093 * 306.17439 * 11 10 9 13 13 C 1.46904 * 110.99768 * 187.25298 * 12 11 10 14 14 C 1.53001 * 109.46651 * 170.00089 * 13 12 11 15 15 C 1.50704 * 109.46724 * 179.97438 * 14 13 12 16 16 C 1.38424 * 122.54137 * 89.99909 * 15 14 13 17 17 C 1.33388 * 114.92401 * 179.97438 * 16 15 14 18 18 S 1.75887 * 109.59131 * 359.97438 * 17 16 15 19 19 C 1.33390 * 122.54007 * 269.70390 * 15 14 13 20 20 C 1.46904 * 111.27088 * 63.10182 * 12 11 10 21 21 C 1.47081 * 120.87856 * 153.48641 * 9 7 2 22 22 H 0.97000 * 119.99553 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.62779 * 111.45383 * 10 9 7 24 24 H 1.08999 * 109.79098 * 350.96409 * 10 9 7 25 25 H 1.08999 * 109.49525 * 186.21171 * 11 10 9 26 26 H 1.09000 * 109.48927 * 66.13475 * 11 10 9 27 27 H 1.09001 * 109.46969 * 289.99364 * 13 12 11 28 28 H 1.08998 * 109.47421 * 49.99871 * 13 12 11 29 29 H 1.09001 * 109.46842 * 299.99353 * 14 13 12 30 30 H 1.08996 * 109.47500 * 60.00296 * 14 13 12 31 31 H 1.08004 * 122.54079 * 359.97438 * 16 15 14 32 32 H 1.08003 * 125.20747 * 179.97438 * 17 16 15 33 33 H 1.08004 * 125.20026 * 0.03140 * 19 15 14 34 34 H 1.08998 * 109.48800 * 56.85788 * 20 12 11 35 35 H 1.08995 * 109.48703 * 176.93484 * 20 12 11 36 36 H 1.08999 * 109.62420 * 248.54761 * 21 9 7 37 37 H 1.08998 * 109.62933 * 9.13239 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4559 2.0705 -1.3993 5 1 1.4693 2.6402 0.7413 6 1 3.5681 1.4284 0.6578 7 6 2.0102 -1.2022 0.0005 8 1 1.5217 -2.1076 0.3293 9 7 3.3142 -1.2402 -0.4159 10 6 3.8307 -0.2486 -1.3714 11 6 4.5272 -0.9923 -2.5160 12 7 5.5362 -1.9042 -1.9608 13 6 6.3438 -2.5086 -3.0287 14 6 7.5324 -3.2490 -2.4122 15 6 8.3606 -3.8696 -3.5077 16 6 9.4106 -3.2032 -4.1157 17 6 10.0404 -3.8953 -5.0663 18 16 9.2970 -5.4807 -5.2321 19 6 8.1411 -5.1048 -3.9609 20 6 4.9160 -2.9375 -1.1208 21 6 4.2355 -2.2735 0.0810 22 1 -0.4849 0.8401 -0.0004 23 1 4.5454 0.4047 -0.8707 24 1 3.0073 0.3454 -1.7681 25 1 5.0113 -0.2725 -3.1761 26 1 3.7903 -1.5647 -3.0794 27 1 5.7316 -3.2114 -3.5938 28 1 6.7086 -1.7270 -3.6951 29 1 8.1447 -2.5462 -1.8471 30 1 7.1676 -4.0307 -1.7459 31 1 9.6980 -2.1990 -3.8413 32 1 10.8786 -3.5370 -5.6455 33 1 7.3704 -5.7715 -3.6031 34 1 4.1737 -3.4828 -1.7037 35 1 5.6821 -3.6284 -0.7691 36 1 4.9890 -1.8149 0.7212 37 1 3.6775 -3.0210 0.6449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070246526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:00 Heat of formation + Delta-G solvation = 48.039457 kcal Electronic energy + Delta-G solvation = -17921.797094 eV Core-core repulsion = 15211.815000 eV Total energy + Delta-G solvation = -2709.982094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14292 -39.03517 -36.42953 -33.85893 -32.38834 -31.85154 -29.75040 -27.87833 -25.35468 -24.73936 -23.84516 -22.57461 -20.99853 -19.57508 -18.84769 -18.39674 -17.39472 -16.59714 -16.13941 -15.87086 -15.71198 -15.40019 -15.36095 -14.56812 -14.28774 -14.01490 -13.99591 -13.77578 -13.50636 -13.13019 -12.90127 -12.80974 -12.54809 -12.31484 -12.18507 -11.90761 -11.71237 -11.62966 -11.51884 -11.36896 -10.72977 -9.67753 -9.40190 -9.22171 -8.90250 -8.17786 -5.49298 0.13165 0.80777 1.11678 1.29857 1.41871 1.52015 1.80040 2.41307 2.90564 3.07127 3.36457 3.98607 4.05004 4.15185 4.22248 4.25560 4.32856 4.45865 4.53149 4.58953 4.60671 4.64766 4.70898 4.77112 4.83170 4.96091 4.96979 5.01922 5.18003 5.22244 5.29645 5.54960 5.65421 5.81865 6.07813 6.11568 6.22322 6.88885 7.60132 8.02919 9.02211 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049117 B = 0.003703 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.925197 B = 7559.042204 C = 7792.330817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.263 1.263 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.625 5.625 10 C 0.125 3.875 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.068 3.932 14 C -0.049 4.049 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.212 4.212 18 S 0.086 5.914 19 C -0.223 4.223 20 C 0.050 3.950 21 C 0.145 3.855 22 H 0.262 0.738 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.018 0.982 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.437 -8.353 -10.588 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.231 4.231 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.239 1.239 6 H -0.188 1.188 7 C -0.380 4.380 8 H 0.070 0.930 9 N -0.350 5.350 10 C 0.000 4.000 11 C -0.076 4.076 12 N -0.262 5.262 13 C -0.060 4.060 14 C -0.089 4.089 15 C -0.116 4.116 16 C -0.171 4.171 17 C -0.347 4.347 18 S 0.350 5.650 19 C -0.359 4.359 20 C -0.079 4.079 21 C 0.021 3.979 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.170 0.830 32 H 0.202 0.798 33 H 0.186 0.814 34 H 0.036 0.964 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.900 -9.287 -11.222 27.140 hybrid contribution -1.246 1.534 0.550 2.051 sum 21.654 -7.753 -10.671 25.355 Atomic orbital electron populations 1.69967 1.07411 1.27281 1.55794 1.25900 0.95869 1.01040 1.00296 0.85872 0.78495 0.79978 0.77799 1.19776 1.23869 1.18801 1.18895 0.86644 0.93677 1.38822 0.93013 1.44571 1.07776 1.33624 1.49035 1.21448 0.96016 0.91975 0.90534 1.22434 0.93068 0.96073 0.96075 1.61920 1.23536 1.18961 1.21812 1.22061 0.93836 0.97649 0.92465 1.20238 0.94626 0.99285 0.94747 1.19031 0.98260 0.94192 1.00164 1.20337 0.96700 1.02282 0.97822 1.25906 1.06502 0.97469 1.04846 1.84232 1.27601 1.16431 1.36767 1.25696 1.05778 1.01017 1.03388 1.22548 0.97181 0.93316 0.94888 1.21201 0.91561 0.90668 0.94518 0.92900 0.94580 0.92914 0.88881 0.96117 0.95671 0.90256 0.89745 0.90656 0.83001 0.79824 0.81373 0.96377 0.87943 0.94367 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.14 13.97 21.65 0.30 -60.84 16 2 C -0.04 -2.17 5.24 84.86 0.44 -1.73 16 3 Si 0.95 47.39 24.31 68.60 1.67 49.05 16 4 H -0.27 -12.65 6.58 99.48 0.65 -11.99 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.26 -12.73 6.61 99.48 0.66 -12.08 16 7 C -0.25 -14.59 10.08 84.03 0.85 -13.75 16 8 H 0.05 3.27 8.05 -2.91 -0.02 3.25 16 9 N -0.62 -30.34 2.82 -698.12 -1.97 -32.31 16 10 C 0.13 5.46 4.35 86.35 0.38 5.84 16 11 C 0.05 1.85 5.62 86.39 0.49 2.34 16 12 N -0.54 -16.41 4.63 -895.25 -4.14 -20.56 16 13 C 0.07 1.61 4.94 86.30 0.43 2.04 16 14 C -0.05 -0.97 5.40 29.85 0.16 -0.80 16 15 C -0.10 -1.94 5.06 -20.92 -0.11 -2.05 16 16 C -0.14 -2.37 9.98 21.22 0.21 -2.16 16 17 C -0.21 -3.15 11.23 66.72 0.75 -2.40 16 18 S 0.09 1.37 23.34 -56.49 -1.32 0.05 16 19 C -0.22 -4.04 10.98 66.72 0.73 -3.31 16 20 C 0.05 1.58 5.46 86.38 0.47 2.05 16 21 C 0.15 5.72 6.69 86.35 0.58 6.29 16 22 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.04 1.56 6.94 -2.38 -0.02 1.54 16 24 H 0.05 2.51 4.61 -2.39 -0.01 2.50 16 25 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 28 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 29 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.07 1.46 6.38 -2.39 -0.02 1.44 16 31 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 2.57 6.16 -2.39 -0.01 2.56 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 Total: -1.00 -67.30 303.61 0.86 -66.44 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 0.94 Total: 5.81 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.38 Total: -7.64 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -5.81 Total: -113.71 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.67 Total: 49.05 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.32 Total: 0.05 kcal Total: -67.30 0.86 -66.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070246526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.476 kcal (2) G-P(sol) polarization free energy of solvation -67.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds