Wall clock time and date at job start Mon Mar 30 2020 04:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00169 * 2 1 4 4 H 1.48501 * 109.47256 * 270.00117 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99783 * 3 2 1 6 6 H 1.48501 * 109.47289 * 149.99941 * 3 2 1 7 7 C 1.37876 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47394 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.47332 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99844 * 180.02562 * 12 11 10 14 14 O 1.21602 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.47521 * 119.99612 * 179.97438 * 13 12 11 16 16 C 1.39769 * 120.06739 * 0.20334 * 15 13 12 17 17 C 1.37646 * 119.97314 * 180.27903 * 16 15 13 18 18 C 1.39140 * 120.09459 * 359.49436 * 17 16 15 19 19 N 1.39191 * 119.93948 * 180.25675 * 18 17 16 20 20 C 1.39380 * 120.12755 * 0.27679 * 18 17 16 21 21 F 1.35103 * 119.98603 * 179.97438 * 20 18 17 22 22 C 1.37796 * 120.02986 * 359.97438 * 20 18 17 23 23 H 0.96997 * 119.99701 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47202 * 59.99471 * 9 7 2 25 25 H 1.09008 * 109.47250 * 299.99607 * 9 7 2 26 26 H 1.09000 * 109.47251 * 59.99618 * 10 9 7 27 27 H 1.09001 * 109.47296 * 300.00123 * 10 9 7 28 28 H 1.09000 * 109.47580 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47513 * 300.00039 * 11 10 9 30 30 H 0.97000 * 119.99484 * 0.02562 * 12 11 10 31 31 H 1.08003 * 120.01352 * 0.05473 * 16 15 13 32 32 H 1.08002 * 119.95700 * 179.77600 * 17 16 15 33 33 H 0.97008 * 120.00004 * 359.97438 * 19 18 17 34 34 H 0.97004 * 120.00729 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.05060 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5514 -2.6367 -0.0001 12 7 6.0398 -4.0180 -0.0009 13 6 7.3648 -4.2643 -0.0005 14 8 8.1551 -3.3400 -0.0001 15 6 7.8565 -5.6551 -0.0007 16 6 6.9494 -6.7185 -0.0055 17 6 7.4103 -8.0155 0.0002 18 6 8.7782 -8.2699 0.0000 19 7 9.2407 -9.5827 0.0004 20 6 9.6864 -7.2126 0.0000 21 9 11.0141 -7.4628 0.0004 22 6 9.2308 -5.9121 -0.0004 23 1 -0.4849 0.8400 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1507 0.8896 28 1 5.9149 -2.1230 0.8898 29 1 5.9148 -2.1228 -0.8901 30 1 5.4094 -4.7552 -0.0016 31 1 5.8873 -6.5226 -0.0100 32 1 6.7091 -8.8370 0.0001 33 1 8.6095 -10.3193 0.0010 34 1 10.1942 -9.7612 0.0007 35 1 9.9342 -5.0926 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079866555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:38 Heat of formation + Delta-G solvation = -71.779503 kcal Electronic energy + Delta-G solvation = -18725.642169 eV Core-core repulsion = 15444.251159 eV Total energy + Delta-G solvation = -3281.391010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.08738 -40.19119 -38.60775 -35.56643 -34.97524 -33.33597 -31.58157 -30.85844 -29.41621 -27.04580 -23.96401 -23.16610 -22.46981 -20.76840 -20.09902 -18.37215 -17.78003 -17.32211 -16.81134 -16.05444 -15.94107 -15.73134 -15.33708 -15.31543 -14.27334 -14.19745 -14.01694 -13.71633 -13.40976 -13.06465 -12.74941 -12.61093 -12.03658 -11.91998 -11.64211 -11.08151 -11.06576 -10.87727 -10.22975 -9.97984 -9.78735 -9.60312 -9.24078 -9.22665 -8.88303 -8.55307 -7.99853 -6.06298 -4.04982 0.66539 0.89595 2.74397 3.22655 3.28757 3.32001 3.39623 3.44007 3.63781 3.91724 4.36993 4.44851 4.69019 4.73868 4.93367 5.23741 5.27987 5.49097 5.60205 5.66740 5.69035 5.81652 6.00027 6.02438 6.30975 6.36330 6.45103 6.70259 6.79402 6.85614 7.12923 7.23151 7.36663 7.63430 7.76858 8.32352 8.50378 8.97511 9.56107 11.06955 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046686 B = 0.002984 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.604697 B = 9382.360530 C = 9956.216499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.721 5.721 13 C 0.558 3.442 14 O -0.545 6.545 15 C -0.165 4.165 16 C -0.041 4.041 17 C -0.184 4.184 18 C 0.213 3.787 19 N -0.865 5.865 20 C 0.005 3.995 21 F -0.142 7.142 22 C -0.043 4.043 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.405 0.595 34 H 0.404 0.596 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.610 -20.194 0.020 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.372 5.372 13 C 0.345 3.655 14 O -0.424 6.424 15 C -0.171 4.171 16 C -0.061 4.061 17 C -0.206 4.206 18 C 0.105 3.895 19 N -0.403 5.403 20 C -0.019 4.019 21 F -0.121 7.121 22 C -0.064 4.064 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.233 0.767 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.234 0.766 34 H 0.233 0.767 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.038 -19.372 0.023 26.470 hybrid contribution 0.330 0.093 -0.022 0.344 sum 18.368 -19.279 0.000 26.629 Atomic orbital electron populations 1.69913 1.06326 1.26962 1.51040 1.25029 0.94749 0.99256 0.94463 0.86773 0.80420 0.83499 0.78600 1.20242 1.21394 1.18855 1.21097 0.89321 0.94501 1.51071 0.91005 1.19505 0.97250 0.91477 0.96706 1.21711 0.90606 1.01091 1.01756 1.21683 0.96122 0.80927 1.02122 1.46056 1.06408 1.10101 1.74645 1.18036 0.82628 0.88153 0.76636 1.90778 1.55422 1.45718 1.50466 1.19557 0.93107 0.93424 1.10990 1.21161 0.99667 0.91380 0.93863 1.20424 0.92231 0.97724 1.10263 1.17932 0.92807 0.84823 0.93920 1.42334 1.10864 1.03727 1.83418 1.16919 0.77154 0.92707 1.15090 1.91455 1.30742 1.94834 1.95040 1.21017 0.95846 0.95015 0.94482 0.92700 0.96274 0.96704 0.92082 0.92048 0.91602 0.91616 0.76662 0.84663 0.84483 0.76594 0.76718 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.87 5.51 -61.35 -0.34 -10.20 16 13 C 0.56 8.26 7.76 -12.48 -0.10 8.17 16 14 O -0.55 -10.12 16.34 5.28 0.09 -10.03 16 15 C -0.17 -1.94 5.88 -104.95 -0.62 -2.55 16 16 C -0.04 -0.36 9.53 -39.23 -0.37 -0.73 16 17 C -0.18 -1.36 9.87 -39.46 -0.39 -1.75 16 18 C 0.21 1.75 6.76 -83.76 -0.57 1.18 16 19 N -0.87 -4.51 9.06 32.45 0.29 -4.22 16 20 C 0.01 0.05 7.30 -39.32 -0.29 -0.23 16 21 F -0.14 -1.50 16.62 2.25 0.04 -1.46 16 22 C -0.04 -0.50 9.56 -39.16 -0.37 -0.88 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.40 4.25 6.49 -40.82 -0.26 3.99 16 31 H 0.14 0.89 6.39 -52.48 -0.34 0.56 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.40 1.13 8.83 -40.82 -0.36 0.77 16 34 H 0.40 1.85 8.29 -40.82 -0.34 1.51 16 35 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -33.78 305.80 -6.78 -40.56 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.17 Total: 1.28 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.41 Total: -10.66 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.73 Total: -41.32 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.78 -6.78 -40.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.216 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds