Wall clock time and date at job start Mon Mar 30 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00169 * 2 1 4 4 H 1.48501 * 109.47256 * 270.00117 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99783 * 3 2 1 6 6 H 1.48501 * 109.47289 * 149.99941 * 3 2 1 7 7 C 1.37876 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47394 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.47332 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99844 * 180.02562 * 12 11 10 14 14 O 1.21602 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.47521 * 119.99612 * 179.97438 * 13 12 11 16 16 C 1.39769 * 120.06739 * 0.20334 * 15 13 12 17 17 C 1.37646 * 119.97314 * 180.27903 * 16 15 13 18 18 C 1.39140 * 120.09459 * 359.49436 * 17 16 15 19 19 N 1.39191 * 119.93948 * 180.25675 * 18 17 16 20 20 C 1.39380 * 120.12755 * 0.27679 * 18 17 16 21 21 F 1.35103 * 119.98603 * 179.97438 * 20 18 17 22 22 C 1.37796 * 120.02986 * 359.97438 * 20 18 17 23 23 H 0.96997 * 119.99701 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47202 * 59.99471 * 9 7 2 25 25 H 1.09008 * 109.47250 * 299.99607 * 9 7 2 26 26 H 1.09000 * 109.47251 * 59.99618 * 10 9 7 27 27 H 1.09001 * 109.47296 * 300.00123 * 10 9 7 28 28 H 1.09000 * 109.47580 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47513 * 300.00039 * 11 10 9 30 30 H 0.97000 * 119.99484 * 0.02562 * 12 11 10 31 31 H 1.08003 * 120.01352 * 0.05473 * 16 15 13 32 32 H 1.08002 * 119.95700 * 179.77600 * 17 16 15 33 33 H 0.97008 * 120.00004 * 359.97438 * 19 18 17 34 34 H 0.97004 * 120.00729 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.05060 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5514 -2.6367 -0.0001 12 7 6.0398 -4.0180 -0.0009 13 6 7.3648 -4.2643 -0.0005 14 8 8.1551 -3.3400 -0.0001 15 6 7.8565 -5.6551 -0.0007 16 6 6.9494 -6.7185 -0.0055 17 6 7.4103 -8.0155 0.0002 18 6 8.7782 -8.2699 0.0000 19 7 9.2407 -9.5827 0.0004 20 6 9.6864 -7.2126 0.0000 21 9 11.0141 -7.4628 0.0004 22 6 9.2308 -5.9121 -0.0004 23 1 -0.4849 0.8400 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1507 0.8896 28 1 5.9149 -2.1230 0.8898 29 1 5.9148 -2.1228 -0.8901 30 1 5.4094 -4.7552 -0.0016 31 1 5.8873 -6.5226 -0.0100 32 1 6.7091 -8.8370 0.0001 33 1 8.6095 -10.3193 0.0010 34 1 10.1942 -9.7612 0.0007 35 1 9.9342 -5.0926 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079866555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:37 Heat of formation + Delta-G solvation = -96.270049 kcal Electronic energy + Delta-G solvation = -18726.704159 eV Core-core repulsion = 15444.251159 eV Total energy + Delta-G solvation = -3282.453000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86167 -41.16430 -39.49763 -36.99719 -35.67261 -35.13375 -33.32437 -31.61899 -30.37132 -28.60523 -25.22304 -23.89505 -23.75744 -22.21497 -21.36708 -19.35310 -18.83551 -18.45272 -17.98539 -17.04008 -16.82315 -16.79949 -16.56926 -16.22982 -16.01932 -15.39692 -14.89155 -14.85726 -14.74882 -14.24139 -13.85793 -13.78924 -13.56141 -13.37710 -12.71980 -12.67709 -12.37960 -11.91469 -11.78486 -11.75999 -11.56602 -11.30678 -10.99278 -10.74228 -10.11223 -9.96045 -8.63424 -8.27693 -6.31080 -0.12473 0.18372 1.38314 1.40123 1.51766 1.80914 2.17261 2.38013 2.72610 2.77296 3.08354 3.21451 3.67724 3.78220 4.05343 4.15039 4.21498 4.23873 4.52925 4.58331 4.81951 4.91788 4.93133 5.04148 5.07248 5.11826 5.27220 5.39696 5.52440 5.58875 5.64825 5.67539 6.29623 6.29712 6.58300 6.77204 6.77267 7.23287 7.33802 8.88664 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046686 B = 0.002984 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.604697 B = 9382.360530 C = 9956.216499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.528 4.528 8 H 0.040 0.960 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.710 5.710 13 C 0.557 3.443 14 O -0.592 6.592 15 C -0.189 4.189 16 C -0.031 4.031 17 C -0.177 4.177 18 C 0.225 3.775 19 N -0.849 5.849 20 C -0.014 4.014 21 F -0.148 7.148 22 C -0.056 4.056 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.414 0.586 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.420 0.580 34 H 0.409 0.591 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.325 -22.044 0.003 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.002 3.998 12 N -0.362 5.362 13 C 0.347 3.653 14 O -0.475 6.475 15 C -0.194 4.194 16 C -0.050 4.050 17 C -0.199 4.199 18 C 0.114 3.886 19 N -0.387 5.387 20 C -0.038 4.038 21 F -0.127 7.127 22 C -0.076 4.076 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.253 0.747 31 H 0.177 0.823 32 H 0.191 0.809 33 H 0.252 0.748 34 H 0.238 0.762 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.752 -21.305 0.005 28.383 hybrid contribution 0.094 0.472 -0.018 0.482 sum 18.846 -20.833 -0.013 28.093 Atomic orbital electron populations 1.70056 1.08180 1.28079 1.52834 1.25964 0.95569 1.03365 0.94315 0.85720 0.79535 0.78652 0.79143 1.19311 1.21122 1.17173 1.21471 0.91869 0.93295 1.50018 0.94181 1.19477 0.94094 0.94782 0.96789 1.21485 0.91738 0.98125 1.02434 1.21340 0.94555 0.82436 1.01462 1.45830 1.06594 1.09515 1.74287 1.18505 0.82289 0.89102 0.75419 1.90746 1.56523 1.47420 1.52787 1.19308 0.93526 0.92329 1.14271 1.21411 1.00297 0.91072 0.92223 1.20796 0.92276 0.98141 1.08709 1.18064 0.92929 0.85345 0.92225 1.42393 1.11722 1.03076 1.81501 1.16994 0.77319 0.92911 1.16602 1.91433 1.31221 1.94805 1.95219 1.20940 0.95858 0.95354 0.95456 0.92547 0.96154 0.96255 0.91408 0.91423 0.92415 0.92349 0.74740 0.82319 0.80860 0.74784 0.76159 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 44.38 27.47 68.60 1.88 46.26 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 11 C 0.13 4.00 5.67 86.38 0.49 4.49 16 12 N -0.71 -18.50 5.51 -466.26 -2.57 -21.07 16 13 C 0.56 16.37 7.76 86.69 0.67 17.04 16 14 O -0.59 -22.59 16.34 -4.04 -0.07 -22.66 16 15 C -0.19 -4.27 5.88 -20.08 -0.12 -4.39 16 16 C -0.03 -0.45 9.53 22.50 0.21 -0.23 16 17 C -0.18 -1.93 9.87 22.35 0.22 -1.71 16 18 C 0.22 3.05 6.76 38.47 0.26 3.31 16 19 N -0.85 -5.97 9.06 -51.24 -0.46 -6.43 16 20 C -0.01 -0.28 7.30 22.44 0.16 -0.12 16 21 F -0.15 -3.05 16.62 44.97 0.75 -2.30 16 22 C -0.06 -1.31 9.56 22.55 0.22 -1.09 16 23 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 24 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 25 H 0.02 0.85 7.57 -2.38 -0.02 0.84 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.41 7.87 6.49 -92.71 -0.60 7.27 16 31 H 0.16 1.49 6.39 -2.91 -0.02 1.47 16 32 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.42 0.60 8.83 -92.70 -0.82 -0.22 16 34 H 0.41 2.58 8.29 -92.71 -0.77 1.81 16 35 H 0.13 3.39 7.64 -2.91 -0.02 3.37 16 Total: -1.00 -74.76 305.80 1.85 -72.91 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -1.10 Total: 7.42 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 3.11 Total: -15.27 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.73 Total: -86.36 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.75 Total: -2.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -74.76 1.85 -72.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.359 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds