Wall clock time and date at job start Mon Mar 30 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48506 * 109.47054 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47262 * 29.99380 * 3 2 1 6 6 H 1.48499 * 109.47214 * 149.99993 * 3 2 1 7 7 C 1.37875 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00334 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99918 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47475 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47425 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99875 * 180.02562 * 12 11 10 14 14 O 1.21604 * 120.00141 * 359.97438 * 13 12 11 15 15 C 1.47435 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.39759 * 120.19660 * 5.92183 * 15 13 12 17 17 C 1.37940 * 119.89792 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.84652 * 179.97438 * 17 16 15 19 19 C 1.38784 * 120.29864 * 359.72279 * 17 16 15 20 20 C 1.37957 * 120.40086 * 0.55861 * 19 17 16 21 21 C 1.38928 * 120.09509 * 359.44122 * 20 19 17 22 22 N 1.38994 * 120.15467 * 180.25734 * 21 20 19 23 23 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46823 * 60.00670 * 9 7 2 25 25 H 1.09003 * 109.47444 * 300.00868 * 9 7 2 26 26 H 1.08999 * 109.46729 * 60.00154 * 10 9 7 27 27 H 1.09003 * 109.47454 * 300.00813 * 10 9 7 28 28 H 1.09007 * 109.46918 * 60.00595 * 11 10 9 29 29 H 1.08998 * 109.47425 * 300.00271 * 11 10 9 30 30 H 0.97000 * 120.00011 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.05070 * 359.95626 * 16 15 13 32 32 H 1.08004 * 119.79833 * 180.27525 * 19 17 16 33 33 H 1.08004 * 119.95330 * 179.72670 * 20 19 17 34 34 H 0.96999 * 119.99695 * 354.48349 * 22 21 20 35 35 H 0.97006 * 120.00129 * 174.48829 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 7.3649 -4.2640 0.0001 14 8 8.1552 -3.3397 0.0005 15 6 7.8564 -5.6540 0.0002 16 6 6.9579 -6.7172 -0.1249 17 6 7.4245 -8.0154 -0.1246 18 9 6.5550 -9.0423 -0.2450 19 6 8.7834 -8.2709 -0.0064 20 6 9.6807 -7.2310 0.1235 21 6 9.2289 -5.9173 0.1252 22 7 10.1323 -4.8684 0.2507 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6797 0.8896 25 1 3.8746 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8902 28 1 5.9149 -2.1226 0.8902 29 1 5.9150 -2.1227 -0.8898 30 1 5.4095 -4.7550 -0.0003 31 1 5.8999 -6.5228 -0.2213 32 1 9.1403 -9.2903 -0.0116 33 1 10.7363 -7.4384 0.2194 34 1 11.0698 -5.0532 0.4174 35 1 9.8252 -3.9517 0.1715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079866589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:19 Heat of formation + Delta-G solvation = -67.075652 kcal Electronic energy + Delta-G solvation = -19001.485266 eV Core-core repulsion = 15720.298231 eV Total energy + Delta-G solvation = -3281.187036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.88736 -40.50694 -38.40681 -35.82745 -34.48720 -33.34785 -32.03982 -31.00565 -28.60987 -27.20413 -24.45194 -23.10327 -22.06489 -20.98178 -20.17563 -18.29343 -17.46407 -17.29329 -16.77109 -16.21881 -15.76368 -15.63360 -15.40297 -15.10806 -14.52066 -14.18975 -14.15626 -13.46580 -13.24449 -13.03820 -12.94115 -12.71640 -12.06238 -11.96314 -11.71985 -11.10998 -10.92377 -10.68968 -10.26603 -10.01950 -9.82325 -9.64438 -9.49497 -9.25039 -8.97656 -8.57222 -7.73992 -6.07831 -4.06784 0.54707 1.11573 2.67517 3.19752 3.29694 3.37417 3.41053 3.57049 3.66945 4.10773 4.37878 4.42679 4.47246 4.83678 4.96345 5.26058 5.34356 5.44040 5.52154 5.60117 5.71917 5.76495 5.87507 5.96069 6.23685 6.39883 6.49442 6.61130 6.74283 7.19214 7.20085 7.33043 7.46903 7.67083 7.74607 8.22285 8.48589 8.96032 9.54189 11.05420 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.003480 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.978800 B = 8045.001292 C = 8942.223266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.113 3.887 12 N -0.716 5.716 13 C 0.569 3.431 14 O -0.554 6.554 15 C -0.202 4.202 16 C -0.066 4.066 17 C 0.022 3.978 18 F -0.144 7.144 19 C -0.074 4.074 20 C -0.187 4.187 21 C 0.273 3.727 22 N -0.852 5.852 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.401 0.599 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.394 0.606 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.527 -15.567 0.357 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.009 4.009 12 N -0.366 5.366 13 C 0.357 3.643 14 O -0.435 6.435 15 C -0.211 4.211 16 C -0.086 4.086 17 C 0.001 3.999 18 F -0.123 7.123 19 C -0.094 4.094 20 C -0.210 4.210 21 C 0.160 3.840 22 N -0.399 5.399 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.236 0.764 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.221 0.779 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 20.818 -14.703 0.349 25.489 hybrid contribution 0.064 0.539 -0.013 0.543 sum 20.882 -14.164 0.336 25.235 Atomic orbital electron populations 1.69916 1.06319 1.26975 1.50935 1.25032 0.94751 0.99240 0.94457 0.86771 0.80379 0.83532 0.78579 1.20243 1.21355 1.18921 1.21093 0.89288 0.94543 1.51153 0.90978 1.19498 0.97315 0.91365 0.96667 1.21726 0.90483 1.01194 1.01888 1.21721 0.96324 0.80714 1.02157 1.46036 1.06332 1.10362 1.73841 1.17945 0.82710 0.87622 0.75975 1.90384 1.54543 1.45753 1.52776 1.19146 0.92150 0.93096 1.16719 1.21082 1.00148 0.90580 0.96758 1.17180 0.87417 0.84099 1.11199 1.91491 1.68918 1.57550 1.94293 1.21039 0.91162 1.00278 0.96888 1.20476 1.00158 0.90004 1.10400 1.17768 0.88376 0.88788 0.89099 1.43516 1.09270 1.09524 1.77608 0.92673 0.96288 0.96727 0.92002 0.91982 0.91494 0.91496 0.76370 0.84339 0.84475 0.84621 0.77896 0.73667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.11 1.82 5.67 -4.04 -0.02 1.79 16 12 N -0.72 -9.71 5.50 -61.38 -0.34 -10.05 16 13 C 0.57 8.02 7.75 -12.52 -0.10 7.92 16 14 O -0.55 -8.99 13.64 5.27 0.07 -8.91 16 15 C -0.20 -2.38 5.89 -104.80 -0.62 -3.00 16 16 C -0.07 -0.69 9.49 -39.12 -0.37 -1.06 16 17 C 0.02 0.23 7.28 -39.49 -0.29 -0.06 16 18 F -0.14 -1.59 17.26 2.25 0.04 -1.55 16 19 C -0.07 -0.61 10.00 -39.48 -0.39 -1.01 16 20 C -0.19 -1.52 9.88 -39.43 -0.39 -1.91 16 21 C 0.27 2.84 6.76 -83.58 -0.57 2.27 16 22 N -0.85 -8.10 8.94 32.56 0.29 -7.81 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 25 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.40 4.52 6.54 -40.82 -0.27 4.25 16 31 H 0.14 1.24 6.45 -52.49 -0.34 0.90 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.39 2.48 8.84 -40.82 -0.36 2.12 16 35 H 0.42 4.91 5.34 -40.95 -0.22 4.70 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -32.15 301.61 -6.79 -38.94 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.07 Total: 5.61 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.43 Total: -10.79 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.73 Total: -44.76 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.15 -6.79 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.132 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds