Wall clock time and date at job start Mon Mar 30 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48506 * 109.47054 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47262 * 29.99380 * 3 2 1 6 6 H 1.48499 * 109.47214 * 149.99993 * 3 2 1 7 7 C 1.37875 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00334 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99918 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47475 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47425 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99875 * 180.02562 * 12 11 10 14 14 O 1.21604 * 120.00141 * 359.97438 * 13 12 11 15 15 C 1.47435 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.39759 * 120.19660 * 5.92183 * 15 13 12 17 17 C 1.37940 * 119.89792 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.84652 * 179.97438 * 17 16 15 19 19 C 1.38784 * 120.29864 * 359.72279 * 17 16 15 20 20 C 1.37957 * 120.40086 * 0.55861 * 19 17 16 21 21 C 1.38928 * 120.09509 * 359.44122 * 20 19 17 22 22 N 1.38994 * 120.15467 * 180.25734 * 21 20 19 23 23 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46823 * 60.00670 * 9 7 2 25 25 H 1.09003 * 109.47444 * 300.00868 * 9 7 2 26 26 H 1.08999 * 109.46729 * 60.00154 * 10 9 7 27 27 H 1.09003 * 109.47454 * 300.00813 * 10 9 7 28 28 H 1.09007 * 109.46918 * 60.00595 * 11 10 9 29 29 H 1.08998 * 109.47425 * 300.00271 * 11 10 9 30 30 H 0.97000 * 120.00011 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.05070 * 359.95626 * 16 15 13 32 32 H 1.08004 * 119.79833 * 180.27525 * 19 17 16 33 33 H 1.08004 * 119.95330 * 179.72670 * 20 19 17 34 34 H 0.96999 * 119.99695 * 354.48349 * 22 21 20 35 35 H 0.97006 * 120.00129 * 174.48829 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 7.3649 -4.2640 0.0001 14 8 8.1552 -3.3397 0.0005 15 6 7.8564 -5.6540 0.0002 16 6 6.9579 -6.7172 -0.1249 17 6 7.4245 -8.0154 -0.1246 18 9 6.5550 -9.0423 -0.2450 19 6 8.7834 -8.2709 -0.0064 20 6 9.6807 -7.2310 0.1235 21 6 9.2289 -5.9173 0.1252 22 7 10.1323 -4.8684 0.2507 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6797 0.8896 25 1 3.8746 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8902 28 1 5.9149 -2.1226 0.8902 29 1 5.9150 -2.1227 -0.8898 30 1 5.4095 -4.7550 -0.0003 31 1 5.8999 -6.5228 -0.2213 32 1 9.1403 -9.2903 -0.0116 33 1 10.7363 -7.4384 0.2194 34 1 11.0698 -5.0532 0.4174 35 1 9.8252 -3.9517 0.1715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079866589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:19 Heat of formation + Delta-G solvation = -89.424132 kcal Electronic energy + Delta-G solvation = -19002.454369 eV Core-core repulsion = 15720.298231 eV Total energy + Delta-G solvation = -3282.156139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.68268 -41.44524 -39.31365 -37.12166 -35.58560 -34.86178 -33.51321 -32.18325 -29.47908 -28.75687 -25.54672 -24.37472 -23.02955 -22.29216 -21.55054 -19.29614 -18.84968 -18.20502 -18.01848 -17.22405 -16.80743 -16.72667 -16.41065 -16.19929 -15.89105 -15.49049 -15.27263 -14.78565 -14.45328 -13.98864 -13.88358 -13.87169 -13.68775 -13.51297 -12.76653 -12.70924 -12.42823 -11.92615 -11.78722 -11.60803 -11.42980 -11.34020 -10.92922 -10.76417 -10.33224 -10.04007 -8.49237 -8.29550 -6.33790 -0.22093 0.37650 1.37154 1.38725 1.50578 1.74325 2.13310 2.36411 2.75156 2.95396 3.06223 3.33696 3.67570 3.70612 4.07173 4.12632 4.19086 4.28743 4.48943 4.60227 4.76619 4.87704 4.89766 4.99406 5.03455 5.06545 5.20482 5.33019 5.47432 5.54894 5.64768 5.78567 6.27065 6.43486 6.47455 6.74518 6.90370 7.20832 7.31121 8.87020 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.003480 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.978800 B = 8045.001292 C = 8942.223266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.011 4.011 10 C -0.103 4.103 11 C 0.127 3.873 12 N -0.713 5.713 13 C 0.565 3.435 14 O -0.580 6.580 15 C -0.225 4.225 16 C -0.069 4.069 17 C 0.006 3.994 18 F -0.152 7.152 19 C -0.064 4.064 20 C -0.177 4.177 21 C 0.264 3.736 22 N -0.850 5.850 23 H 0.266 0.734 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.408 0.592 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.231 -16.239 0.419 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.049 4.049 10 C -0.141 4.141 11 C 0.004 3.996 12 N -0.363 5.363 13 C 0.356 3.644 14 O -0.462 6.462 15 C -0.234 4.234 16 C -0.089 4.089 17 C -0.015 4.015 18 F -0.131 7.131 19 C -0.083 4.083 20 C -0.200 4.200 21 C 0.150 3.850 22 N -0.396 5.396 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.249 0.751 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.239 0.761 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 23.551 -15.420 0.414 28.154 hybrid contribution -0.776 0.622 -0.031 0.995 sum 22.776 -14.799 0.383 27.164 Atomic orbital electron populations 1.70068 1.08292 1.28162 1.52695 1.26012 0.95604 1.03539 0.94179 0.85670 0.79534 0.78331 0.79202 1.19211 1.21086 1.16948 1.21476 0.91990 0.93236 1.50304 0.94576 1.19456 0.93990 0.94525 0.96928 1.21505 0.92164 0.98296 1.02137 1.21363 0.94313 0.82126 1.01822 1.45876 1.06750 1.09662 1.74013 1.18322 0.82330 0.88514 0.75247 1.90375 1.55084 1.46774 1.53995 1.19009 0.93162 0.91840 1.19415 1.21140 1.00463 0.90657 0.96652 1.17405 0.88269 0.83754 1.12085 1.91472 1.69367 1.57762 1.94454 1.21388 0.90202 1.01827 0.94906 1.20815 1.01782 0.88648 1.08711 1.18054 0.88035 0.89947 0.88940 1.43493 1.10097 1.08914 1.77094 0.92503 0.95928 0.96050 0.91789 0.91828 0.91905 0.91848 0.75140 0.83708 0.81638 0.81320 0.76148 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -30.25 9.66 25.60 0.25 -30.01 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.50 4.04 29.84 0.12 -0.38 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.13 3.95 5.67 86.38 0.49 4.44 16 12 N -0.71 -18.79 5.50 -466.36 -2.57 -21.36 16 13 C 0.57 15.56 7.75 86.67 0.67 16.23 16 14 O -0.58 -18.51 13.64 -4.04 -0.06 -18.56 16 15 C -0.23 -5.06 5.89 -19.98 -0.12 -5.18 16 16 C -0.07 -1.37 9.49 22.57 0.21 -1.16 16 17 C 0.01 0.11 7.28 22.33 0.16 0.28 16 18 F -0.15 -3.15 17.26 44.97 0.78 -2.38 16 19 C -0.06 -0.85 10.00 22.33 0.22 -0.63 16 20 C -0.18 -2.28 9.88 22.37 0.22 -2.05 16 21 C 0.26 4.96 6.76 38.68 0.26 5.22 16 22 N -0.85 -14.69 8.94 -50.91 -0.45 -15.14 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.02 1.01 7.20 -2.38 -0.02 0.99 16 25 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.41 8.97 6.54 -92.71 -0.61 8.37 16 31 H 0.15 2.50 6.45 -2.91 -0.02 2.48 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.41 4.20 8.84 -92.71 -0.82 3.38 16 35 H 0.41 9.23 5.34 -94.81 -0.51 8.72 16 Total: -1.00 -69.99 301.61 2.16 -67.83 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.84 Total: 19.02 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 3.12 Total: -16.12 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.72 Total: -95.85 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -69.99 2.16 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds