Wall clock time and date at job start Mon Mar 30 2020 04:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47182 * 270.00518 * 3 2 1 5 5 H 1.48497 * 109.46941 * 30.00308 * 3 2 1 6 6 H 1.48504 * 109.47261 * 150.00629 * 3 2 1 7 7 C 1.37883 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46746 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46827 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00140 * 180.27248 * 12 11 10 14 14 O 1.21616 * 120.00022 * 359.72643 * 13 12 11 15 15 C 1.47312 * 119.99610 * 179.72283 * 13 12 11 16 16 C 1.39805 * 120.18657 * 5.98810 * 15 13 12 17 17 C 1.37637 * 119.95217 * 180.02562 * 16 15 13 18 18 C 1.38901 * 120.32381 * 359.97438 * 17 16 15 19 19 F 1.35102 * 119.81358 * 180.02562 * 18 17 16 20 20 C 1.38249 * 120.36996 * 0.04269 * 18 17 16 21 21 C 1.38819 * 120.04110 * 359.67651 * 20 18 17 22 22 N 1.38888 * 120.16696 * 180.29928 * 21 20 18 23 23 H 0.96993 * 119.99976 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47110 * 60.00244 * 9 7 2 25 25 H 1.08997 * 109.47093 * 300.00174 * 9 7 2 26 26 H 1.09002 * 109.46962 * 59.99893 * 10 9 7 27 27 H 1.08997 * 109.47123 * 299.99734 * 10 9 7 28 28 H 1.08994 * 109.47462 * 59.99516 * 11 10 9 29 29 H 1.09005 * 109.46996 * 299.99435 * 11 10 9 30 30 H 0.97000 * 119.99652 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.01969 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.83758 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.97504 * 180.02562 * 20 18 17 34 34 H 0.96994 * 120.00593 * 204.40031 * 22 21 20 35 35 H 0.97000 * 119.99535 * 24.38998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0080 14 8 0.7875 -7.5936 -0.0080 15 6 2.9405 -8.4909 -0.0148 16 6 4.3109 -8.2448 0.1112 17 6 5.2012 -9.2944 0.1037 18 6 4.7452 -10.5998 -0.0280 19 9 5.6281 -11.6224 -0.0335 20 6 3.3930 -10.8585 -0.1538 21 6 2.4812 -9.8118 -0.1423 22 7 1.1216 -10.0692 -0.2623 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8895 27 1 2.8720 -3.6044 -0.8905 28 1 0.8540 -5.0446 -0.8913 29 1 0.8535 -5.0451 0.8887 30 1 3.3860 -5.9233 -0.0014 31 1 4.6707 -7.2317 0.2143 32 1 6.2595 -9.1021 0.2008 33 1 3.0454 -11.8760 -0.2555 34 1 0.5264 -9.3836 -0.6036 35 1 0.7674 -10.9347 -0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079868238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:54 Heat of formation + Delta-G solvation = -92.899107 kcal Electronic energy + Delta-G solvation = -18866.823555 eV Core-core repulsion = 15584.516730 eV Total energy + Delta-G solvation = -3282.306825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97016 -41.37498 -39.25688 -37.04059 -35.66016 -34.93233 -33.21440 -31.68400 -29.93324 -28.43026 -25.42322 -24.35396 -23.28902 -22.29554 -21.51229 -19.03561 -18.64494 -18.51284 -18.05999 -17.06806 -16.72747 -16.56184 -16.44748 -16.27794 -16.07666 -15.52982 -15.32634 -14.60842 -14.20715 -14.15376 -13.89451 -13.73762 -13.65110 -13.32765 -12.73880 -12.53819 -12.40498 -12.26478 -11.65900 -11.61026 -11.47630 -11.22293 -10.83759 -10.54344 -10.19235 -9.84875 -8.73066 -8.18685 -6.29943 -0.25635 0.41976 1.42925 1.44002 1.54994 1.75554 2.18744 2.43715 2.74803 2.82123 3.15357 3.32614 3.71260 3.79700 4.09871 4.19190 4.23793 4.28697 4.53576 4.56984 4.85977 4.92487 4.96353 5.01950 5.16547 5.18947 5.21200 5.42321 5.53980 5.72472 5.75758 5.85589 6.23407 6.45615 6.55197 6.87741 6.89261 7.24648 7.39778 8.93449 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037937 B = 0.003050 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.891684 B = 9177.842907 C = 9885.370163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.131 3.869 12 N -0.710 5.710 13 C 0.561 3.439 14 O -0.584 6.584 15 C -0.246 4.246 16 C -0.005 4.005 17 C -0.215 4.215 18 C 0.163 3.837 19 F -0.138 7.138 20 C -0.243 4.243 21 C 0.288 3.712 22 N -0.853 5.853 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.414 0.586 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.411 0.589 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -21.836 -0.220 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.007 3.993 12 N -0.361 5.361 13 C 0.351 3.649 14 O -0.467 6.467 15 C -0.255 4.255 16 C -0.024 4.024 17 C -0.236 4.236 18 C 0.143 3.857 19 F -0.116 7.116 20 C -0.267 4.267 21 C 0.176 3.824 22 N -0.397 5.397 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.251 0.749 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.247 0.753 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.000 -21.855 -0.225 24.035 hybrid contribution -0.044 0.788 -0.023 0.789 sum 9.956 -21.068 -0.248 23.303 Atomic orbital electron populations 1.70107 1.07952 1.27773 1.51782 1.26020 0.95730 1.03548 0.94824 0.85426 0.78730 0.78322 0.78436 1.19860 1.21149 1.18341 1.21701 0.93797 0.92020 1.50328 0.91460 1.18942 0.94451 0.92954 0.95066 1.21610 0.98477 0.91776 1.02227 1.21249 0.91884 0.85296 1.00858 1.45830 1.11196 1.04827 1.74263 1.18392 0.87825 0.83272 0.75381 1.90541 1.18079 1.84733 1.53347 1.19553 0.94644 0.91934 1.19328 1.21196 0.89888 1.00522 0.90760 1.21052 1.02308 0.89969 1.10254 1.17774 0.86386 0.84701 0.96857 1.91512 1.68199 1.58612 1.93313 1.20711 0.90985 1.00297 1.14657 1.17483 0.85695 0.91140 0.88065 1.42949 1.04896 1.20470 1.71381 0.92841 0.98948 0.98965 0.91266 0.91264 0.92959 0.93064 0.74854 0.82262 0.82111 0.82734 0.75260 0.76199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.13 4.46 5.67 86.38 0.49 4.95 16 12 N -0.71 -18.90 5.50 -466.49 -2.57 -21.46 16 13 C 0.56 15.96 7.74 86.63 0.67 16.63 16 14 O -0.58 -20.21 13.80 -4.08 -0.06 -20.27 16 15 C -0.25 -5.51 5.89 -19.98 -0.12 -5.62 16 16 C 0.00 -0.07 9.51 22.51 0.21 0.14 16 17 C -0.22 -3.22 10.00 22.29 0.22 -3.00 16 18 C 0.16 2.80 7.30 22.43 0.16 2.97 16 19 F -0.14 -2.44 17.26 44.97 0.78 -1.67 16 20 C -0.24 -4.20 9.90 22.41 0.22 -3.98 16 21 C 0.29 6.02 6.76 38.70 0.26 6.28 16 22 N -0.85 -16.88 8.49 -50.97 -0.43 -17.31 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 30 H 0.41 8.20 6.53 -92.71 -0.61 7.59 16 31 H 0.16 1.77 6.44 -2.91 -0.02 1.75 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.41 9.88 6.09 -92.71 -0.56 9.32 16 35 H 0.41 5.64 8.90 -92.71 -0.83 4.81 16 Total: -1.00 -68.38 305.76 2.31 -66.06 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.85 Total: 19.02 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.13 Total: -13.23 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -2.72 Total: -95.31 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.38 2.31 -66.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079868238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.836 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds