Wall clock time and date at job start Mon Mar 30 2020 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00213 * 2 1 4 4 C 1.50700 * 109.46681 * 269.99819 * 3 2 1 5 5 H 1.07993 * 120.00482 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99725 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99748 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47296 * 59.99862 * 8 6 4 10 10 H 1.48500 * 109.47040 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47265 * 299.99410 * 8 6 4 12 12 C 1.34778 * 119.99969 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00097 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99976 * 0.02562 * 12 2 1 15 15 N 1.46505 * 109.47187 * 179.97438 * 14 12 2 16 16 C 1.34957 * 125.63152 * 265.02888 * 15 14 12 17 17 C 1.35491 * 108.98065 * 179.97438 * 16 15 14 18 18 C 1.39795 * 107.84403 * 0.23956 * 17 16 15 19 19 C 1.37691 * 125.63453 * 84.99661 * 15 14 12 20 20 C 1.46497 * 126.26533 * 0.02562 * 19 15 14 21 21 O 1.21616 * 120.00090 * 179.97438 * 20 19 15 22 22 O 1.34892 * 119.99506 * 359.97438 * 20 19 15 23 23 H 1.08999 * 109.47363 * 270.00493 * 1 2 3 24 24 H 1.09003 * 109.47010 * 30.00674 * 1 2 3 25 25 H 1.09006 * 109.46886 * 150.00044 * 1 2 3 26 26 H 1.08999 * 109.46903 * 29.99166 * 3 2 1 27 27 H 1.08997 * 109.47461 * 149.99828 * 3 2 1 28 28 H 0.97002 * 119.99862 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46957 * 59.99735 * 14 12 2 30 30 H 1.08997 * 109.47175 * 300.00008 * 14 12 2 31 31 H 1.08001 * 125.51224 * 359.97438 * 16 15 14 32 32 H 1.08002 * 126.07453 * 179.97438 * 17 16 15 33 33 H 1.08003 * 126.51844 * 179.72917 * 18 17 16 34 34 H 0.96705 * 116.99707 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4390 3.4160 -3.4341 9 1 2.1417 3.5939 -4.1345 10 1 4.1815 4.7021 -3.4341 11 1 4.2415 2.3807 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3374 -3.5859 0.0005 16 6 2.7760 -4.2453 -1.0923 17 6 3.6456 -5.2097 -0.7055 18 6 3.7526 -5.1565 0.6873 19 6 2.9329 -4.1322 1.1153 20 6 2.7290 -3.7077 2.5026 21 8 3.3165 -4.2740 3.4044 22 8 1.8897 -2.6887 2.7795 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0313 4.4433 -0.8505 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 2.4816 -4.0378 -2.1104 32 1 4.1608 -5.9000 -1.3571 33 1 4.3625 -5.7944 1.3099 34 1 1.7873 -2.4448 3.7097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084888457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:49 Heat of formation + Delta-G solvation = -67.051758 kcal Electronic energy + Delta-G solvation = -20313.804072 eV Core-core repulsion = 17020.245283 eV Total energy + Delta-G solvation = -3293.558789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49612 -39.52308 -38.83176 -36.03518 -34.96901 -33.07129 -32.48285 -29.55320 -28.52914 -26.92934 -25.65374 -23.84554 -22.84550 -20.66352 -19.92108 -18.96828 -17.92687 -17.35655 -16.76027 -16.60553 -15.57089 -15.43100 -15.22666 -14.91883 -14.32006 -13.76432 -13.60215 -13.27165 -12.86262 -12.59633 -12.53543 -12.29488 -12.24986 -11.96951 -11.74572 -11.50890 -11.27755 -10.97247 -10.73277 -10.64247 -10.23557 -9.74341 -9.40788 -8.56341 -8.49935 -8.23242 -7.79442 -6.11210 -4.16843 1.30418 2.59817 2.83100 3.09591 3.17520 3.26953 3.28791 3.32187 3.35015 3.84641 4.38355 4.76432 4.84976 4.91222 5.10196 5.23503 5.27218 5.45339 5.51833 5.59795 5.79346 6.07001 6.10685 6.19897 6.47511 6.77555 6.88064 7.01203 7.18879 7.33631 7.40214 7.83776 7.94893 8.13942 8.22458 8.77188 8.91801 9.48388 10.96934 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005318 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.107939 B = 5263.729807 C = 5650.231113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.247 3.753 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.523 6.523 14 C 0.077 3.923 15 N -0.394 5.394 16 C 0.045 3.955 17 C -0.216 4.216 18 C -0.097 4.097 19 C -0.042 4.042 20 C 0.560 3.440 21 O -0.516 6.516 22 O -0.517 6.517 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -13.878 1.806 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.330 5.330 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.278 3.722 13 O -0.399 6.399 14 C -0.048 4.048 15 N -0.068 5.068 16 C -0.092 4.092 17 C -0.240 4.240 18 C -0.123 4.123 19 C -0.152 4.152 20 C 0.406 3.594 21 O -0.406 6.406 22 O -0.329 6.329 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.777 -13.617 1.753 15.779 hybrid contribution 0.038 0.752 -0.453 0.879 sum -7.739 -12.865 1.299 15.070 Atomic orbital electron populations 1.21704 0.81241 1.02681 1.00781 1.48120 1.06223 1.07490 1.71137 1.19318 0.92560 0.77676 0.97623 1.21357 1.36999 1.06443 0.92120 0.92546 1.24942 0.95216 0.96346 0.97538 1.69918 1.38067 1.14351 1.30874 0.86540 0.78380 0.77905 0.84490 1.20208 1.21085 1.20160 1.20212 0.88405 0.84903 0.78665 1.90750 1.13377 1.86572 1.49206 1.22082 0.91219 0.85151 1.06373 1.43521 1.32986 1.24290 1.05976 1.21971 0.99840 0.95656 0.91712 1.20795 1.04793 1.03616 0.94773 1.21259 0.98668 0.97196 0.95165 1.19225 1.08359 1.03495 0.84073 1.19491 0.75585 0.76460 0.87881 1.90915 1.47465 1.55445 1.46734 1.84641 1.61718 1.50319 1.36218 0.93270 0.90337 0.92700 0.94766 0.93844 0.92545 0.86584 0.85773 0.81270 0.83598 0.83331 0.72788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.85 0.61 1.73 16 2 N -0.60 -11.92 2.86 -182.95 -0.52 -12.44 16 3 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 4 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.49 9.80 7.64 -10.98 -0.08 9.71 16 13 O -0.52 -13.15 16.01 5.56 0.09 -13.06 16 14 C 0.08 1.07 4.43 -5.19 -0.02 1.05 16 15 N -0.39 -5.93 2.24 -114.31 -0.26 -6.19 16 16 C 0.05 0.60 11.33 -17.16 -0.19 0.41 16 17 C -0.22 -2.78 10.81 -39.98 -0.43 -3.22 16 18 C -0.10 -1.41 10.66 -39.09 -0.42 -1.82 16 19 C -0.04 -0.68 6.88 -82.00 -0.56 -1.24 16 20 C 0.56 8.91 8.29 34.06 0.28 9.19 16 21 O -0.52 -9.12 17.67 -19.35 -0.34 -9.47 16 22 O -0.52 -6.71 10.89 -41.02 -0.45 -7.16 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 25 H 0.05 0.58 6.44 -51.93 -0.33 0.24 16 26 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.12 1.23 7.38 -51.93 -0.38 0.84 16 30 H 0.12 1.48 6.43 -51.93 -0.33 1.15 16 31 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.41 3.43 9.11 45.56 0.42 3.84 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -36.74 305.48 -5.52 -42.26 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.10 Total: 1.80 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.27 Total: 8.71 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.04 Total: -44.19 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.70 Total: -29.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.74 -5.52 -42.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084888457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.788 kcal (2) G-P(sol) polarization free energy of solvation -36.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds