Wall clock time and date at job start Mon Mar 30 2020 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00213 * 2 1 4 4 C 1.50700 * 109.46681 * 269.99819 * 3 2 1 5 5 H 1.07993 * 120.00482 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99725 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99748 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47296 * 59.99862 * 8 6 4 10 10 H 1.48500 * 109.47040 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47265 * 299.99410 * 8 6 4 12 12 C 1.34778 * 119.99969 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00097 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99976 * 0.02562 * 12 2 1 15 15 N 1.46505 * 109.47187 * 179.97438 * 14 12 2 16 16 C 1.34957 * 125.63152 * 265.02888 * 15 14 12 17 17 C 1.35491 * 108.98065 * 179.97438 * 16 15 14 18 18 C 1.39795 * 107.84403 * 0.23956 * 17 16 15 19 19 C 1.37691 * 125.63453 * 84.99661 * 15 14 12 20 20 C 1.46497 * 126.26533 * 0.02562 * 19 15 14 21 21 O 1.21616 * 120.00090 * 179.97438 * 20 19 15 22 22 O 1.34892 * 119.99506 * 359.97438 * 20 19 15 23 23 H 1.08999 * 109.47363 * 270.00493 * 1 2 3 24 24 H 1.09003 * 109.47010 * 30.00674 * 1 2 3 25 25 H 1.09006 * 109.46886 * 150.00044 * 1 2 3 26 26 H 1.08999 * 109.46903 * 29.99166 * 3 2 1 27 27 H 1.08997 * 109.47461 * 149.99828 * 3 2 1 28 28 H 0.97002 * 119.99862 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46957 * 59.99735 * 14 12 2 30 30 H 1.08997 * 109.47175 * 300.00008 * 14 12 2 31 31 H 1.08001 * 125.51224 * 359.97438 * 16 15 14 32 32 H 1.08002 * 126.07453 * 179.97438 * 17 16 15 33 33 H 1.08003 * 126.51844 * 179.72917 * 18 17 16 34 34 H 0.96705 * 116.99707 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4390 3.4160 -3.4341 9 1 2.1417 3.5939 -4.1345 10 1 4.1815 4.7021 -3.4341 11 1 4.2415 2.3807 -4.1336 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3374 -3.5859 0.0005 16 6 2.7760 -4.2453 -1.0923 17 6 3.6456 -5.2097 -0.7055 18 6 3.7526 -5.1565 0.6873 19 6 2.9329 -4.1322 1.1153 20 6 2.7290 -3.7077 2.5026 21 8 3.3165 -4.2740 3.4044 22 8 1.8897 -2.6887 2.7795 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0313 4.4433 -0.8505 29 1 0.7590 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 2.4816 -4.0378 -2.1104 32 1 4.1608 -5.9000 -1.3571 33 1 4.3625 -5.7944 1.3099 34 1 1.7873 -2.4448 3.7097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084888457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:48 Heat of formation + Delta-G solvation = -93.491730 kcal Electronic energy + Delta-G solvation = -20314.950595 eV Core-core repulsion = 17020.245283 eV Total energy + Delta-G solvation = -3294.705312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.58818 -40.73805 -40.30640 -37.18268 -36.64770 -34.82968 -33.93454 -30.62568 -30.26216 -28.22823 -27.17325 -25.01073 -24.66921 -21.70633 -21.15480 -20.32322 -19.08076 -18.71834 -18.51663 -18.16299 -17.03971 -16.71941 -16.55343 -16.38957 -15.97839 -15.03969 -14.84325 -14.48712 -14.27763 -13.97347 -13.80645 -13.68113 -13.48092 -13.29092 -13.13734 -12.95730 -12.75288 -12.66483 -12.54538 -12.20891 -11.95247 -11.74390 -10.93177 -10.65796 -9.74454 -9.46957 -9.29694 -8.24165 -6.39320 0.15684 1.36467 1.40734 1.47002 1.49678 1.71221 1.81370 2.03546 2.17476 2.33028 2.48272 3.06116 3.58750 3.77056 3.86202 4.12826 4.28384 4.41705 4.49165 4.61020 4.73858 4.95357 4.99475 5.06500 5.20164 5.23178 5.43993 5.52109 5.75172 5.79015 5.92210 6.02835 6.18801 6.65306 6.72598 6.88762 7.24436 7.39347 8.82915 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005318 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.107939 B = 5263.729807 C = 5650.231113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.257 1.257 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.487 3.513 13 O -0.588 6.588 14 C 0.090 3.910 15 N -0.403 5.403 16 C 0.044 3.956 17 C -0.218 4.218 18 C -0.106 4.106 19 C -0.079 4.079 20 C 0.559 3.441 21 O -0.547 6.547 22 O -0.512 6.512 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.026 0.974 27 H -0.008 1.008 28 H 0.267 0.733 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -14.920 -0.156 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C 0.140 3.860 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.181 1.181 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.274 3.726 13 O -0.469 6.469 14 C -0.034 4.034 15 N -0.077 5.077 16 C -0.092 4.092 17 C -0.241 4.241 18 C -0.132 4.132 19 C -0.188 4.188 20 C 0.406 3.594 21 O -0.439 6.439 22 O -0.327 6.327 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.044 0.956 27 H 0.010 0.990 28 H 0.076 0.924 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.219 0.781 32 H 0.192 0.808 33 H 0.172 0.828 34 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -9.744 -14.666 -0.198 17.609 hybrid contribution 0.616 1.063 0.190 1.244 sum -9.127 -13.603 -0.008 16.381 Atomic orbital electron populations 1.22063 0.77292 1.04550 1.03076 1.48101 1.08609 1.05858 1.70803 1.18742 0.90945 0.80271 0.96082 1.21680 1.36897 1.06541 0.93002 0.92393 1.25893 0.94904 0.96515 1.02000 1.70051 1.38885 1.14838 1.33228 0.85458 0.78947 0.77268 0.79099 1.18107 1.20656 1.20330 1.21246 0.87996 0.86539 0.76800 1.90717 1.16483 1.87711 1.51973 1.22148 0.90407 0.81212 1.09620 1.43657 1.33478 1.24503 1.06073 1.22653 0.99029 0.94925 0.92613 1.21202 1.04602 1.04001 0.94271 1.21598 0.98253 0.96981 0.96397 1.19485 1.09958 1.04795 0.84553 1.19623 0.75383 0.76455 0.87893 1.90887 1.48823 1.56622 1.47557 1.84582 1.60792 1.49275 1.38035 0.90751 0.91194 0.88126 0.95626 0.98984 0.92437 0.82110 0.83465 0.78140 0.80823 0.82785 0.70669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 10.24 127.77 1.31 3.10 16 2 N -0.60 -23.54 2.86 -851.12 -2.43 -25.97 16 3 C 0.26 13.70 5.16 85.63 0.44 14.14 16 4 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.33 5.46 84.66 0.46 0.79 16 7 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.49 18.84 7.64 87.66 0.67 19.51 16 13 O -0.59 -30.19 16.01 -3.01 -0.05 -30.24 16 14 C 0.09 2.23 4.43 85.63 0.38 2.61 16 15 N -0.40 -11.25 2.24 -515.58 -1.15 -12.40 16 16 C 0.04 1.05 11.33 83.58 0.95 2.00 16 17 C -0.22 -5.12 10.81 22.01 0.24 -4.89 16 18 C -0.11 -2.99 10.66 22.59 0.24 -2.75 16 19 C -0.08 -2.48 6.88 40.32 0.28 -2.21 16 20 C 0.56 17.77 8.29 69.97 0.58 18.35 16 21 O -0.55 -19.69 17.67 19.46 0.34 -19.35 16 22 O -0.51 -12.91 10.89 -58.06 -0.63 -13.54 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 25 H 0.10 1.60 6.44 -2.38 -0.02 1.58 16 26 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 27 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.16 2.51 7.38 -2.39 -0.02 2.50 16 30 H 0.15 2.95 6.43 -2.39 -0.02 2.94 16 31 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.43 6.85 9.11 -74.05 -0.67 6.18 16 Total: -1.00 -84.04 305.48 4.64 -79.41 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.46 Total: 11.28 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 5.79 Total: 20.53 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -3.30 Total: -94.08 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.34 Total: -63.13 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -84.04 4.64 -79.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084888457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.082 kcal (2) G-P(sol) polarization free energy of solvation -84.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds