Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 115.54943 * 2 1 4 4 C 1.53073 * 117.51289 * 214.28305 * 2 1 3 5 5 H 1.08996 * 117.51441 * 359.97438 * 4 2 1 6 6 C 1.50704 * 117.49464 * 145.03421 * 4 2 1 7 7 O 1.20821 * 119.99949 * 317.29943 * 6 4 2 8 8 O 1.34232 * 119.99759 * 137.29599 * 6 4 2 9 9 C 1.52997 * 117.50082 * 145.67438 * 2 1 3 10 10 H 1.09004 * 117.49945 * 215.00339 * 9 2 1 11 11 C 1.50701 * 117.50180 * 359.97438 * 9 2 1 12 12 O 1.21295 * 119.99445 * 359.91506 * 11 9 2 13 13 N 1.34774 * 120.00183 * 179.91366 * 11 9 2 14 14 C 1.37108 * 119.99819 * 179.97438 * 13 11 9 15 15 H 1.08001 * 119.99589 * 23.64858 * 14 13 11 16 16 C 1.38943 * 119.99915 * 203.64555 * 14 13 11 17 17 N 1.31414 * 119.99885 * 46.95606 * 16 14 13 18 18 Si 1.86797 * 120.00115 * 226.95309 * 16 14 13 19 19 H 1.48499 * 109.47034 * 89.99744 * 18 16 14 20 20 H 1.48501 * 109.47153 * 330.00478 * 18 16 14 21 21 H 1.48499 * 109.47257 * 210.00120 * 18 16 14 22 22 C 1.46491 * 120.00018 * 0.02562 * 13 11 9 23 23 C 1.47203 * 109.47106 * 276.73169 * 22 13 11 24 24 N 5.24309 * 121.75222 * 178.95437 * 2 1 3 25 25 H 1.09008 * 109.46922 * 274.32635 * 1 2 3 26 26 H 1.08996 * 109.47345 * 34.32727 * 1 2 3 27 27 H 1.09003 * 109.47138 * 154.33051 * 1 2 3 28 28 H 1.09000 * 109.47397 * 196.06179 * 3 2 1 29 29 H 1.09001 * 109.47390 * 316.06526 * 3 2 1 30 30 H 1.09004 * 109.47078 * 76.06754 * 3 2 1 31 31 H 0.96700 * 116.99462 * 179.97438 * 8 6 4 32 32 H 0.97000 * 120.00223 * 6.12813 * 17 16 14 33 33 H 1.08993 * 109.47453 * 36.73768 * 22 13 11 34 34 H 1.09003 * 109.47071 * 156.73359 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2371 -1.1218 -0.7647 5 1 1.6123 -1.8600 -1.2675 6 6 3.5301 -0.7819 -1.4603 7 8 3.6306 0.2521 -2.0770 8 8 4.5700 -1.6281 -1.3945 9 6 2.2364 -1.1207 0.7653 10 1 3.1713 -0.8747 1.2688 11 6 1.3721 -2.1399 1.4619 12 8 0.1638 -2.0514 1.4039 13 7 1.9417 -3.1496 2.1492 14 6 1.1552 -4.0765 2.7834 15 1 0.1429 -4.2462 2.4475 16 6 1.6607 -4.7976 3.8582 17 7 2.3056 -4.1771 4.8206 18 14 1.4234 -6.6488 3.9353 19 1 2.5652 -7.3225 3.2663 20 1 0.1599 -7.0150 3.2462 21 1 1.3563 -7.0806 5.3546 22 6 3.4010 -3.2561 2.2196 23 6 3.9023 -3.9341 1.0130 24 7 4.2891 -4.4576 0.0814 25 1 -0.3633 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4452 28 1 3.2375 1.2823 -0.2843 29 1 1.6788 2.0274 -0.7130 30 1 2.1233 1.8149 0.9975 31 1 5.3782 -1.3670 -1.8568 32 1 2.3523 -3.2083 4.8270 33 1 3.8355 -2.2586 2.2829 34 1 3.6812 -3.8310 3.1023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085405552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -58.724576 kcal Electronic energy + Delta-G solvation = -20810.197693 eV Core-core repulsion = 17516.999998 eV Total energy + Delta-G solvation = -3293.197695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73850 -39.21602 -37.25499 -36.05679 -35.78265 -34.65541 -32.08884 -29.57320 -27.69809 -27.22268 -26.06926 -24.12318 -21.78266 -19.81325 -18.53954 -18.21985 -17.94473 -17.12372 -16.66254 -15.79085 -15.70256 -15.03697 -14.01025 -13.79854 -13.68846 -13.55097 -13.40081 -13.32891 -12.80495 -12.49883 -12.32792 -12.09005 -11.96581 -11.63961 -11.54004 -11.51521 -11.19281 -11.10614 -10.82914 -10.50480 -10.36417 -10.29313 -10.01497 -9.68063 -9.06986 -8.48586 -8.19023 -7.01936 -4.01615 2.15935 2.95697 3.05322 3.12283 3.31486 3.33755 3.40044 3.49040 3.98367 4.05722 4.38006 4.49097 4.71735 4.81503 5.01754 5.07893 5.25227 5.32811 5.45176 5.70865 5.73750 5.84345 5.93669 6.05362 6.09242 6.18267 6.26588 6.39317 6.51479 6.82638 7.59576 7.94040 8.00758 8.12895 8.27821 8.72749 9.12358 9.63068 10.22122 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.007040 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.981612 B = 3976.476587 C = 4700.206831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.057 4.057 3 C -0.119 4.119 4 C -0.146 4.146 5 H 0.141 0.859 6 C 0.514 3.486 7 O -0.512 6.512 8 O -0.503 6.503 9 C -0.149 4.149 10 H 0.118 0.882 11 C 0.476 3.524 12 O -0.556 6.556 13 N -0.430 5.430 14 C -0.439 4.439 15 H 0.100 0.900 16 C 0.033 3.967 17 N -0.829 5.829 18 Si 1.046 2.954 19 H -0.281 1.281 20 H -0.278 1.278 21 H -0.282 1.282 22 C 0.185 3.815 23 C 0.202 3.798 24 N -0.435 5.435 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.405 0.595 32 H 0.283 0.717 33 H 0.100 0.900 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 6.740 -5.040 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.058 4.058 3 C -0.176 4.176 4 C -0.165 4.165 5 H 0.159 0.841 6 C 0.357 3.643 7 O -0.401 6.401 8 O -0.313 6.313 9 C -0.170 4.170 10 H 0.136 0.864 11 C 0.265 3.735 12 O -0.438 6.438 13 N -0.149 5.149 14 C -0.563 4.563 15 H 0.117 0.883 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.871 3.129 19 H -0.207 1.207 20 H -0.204 1.204 21 H -0.208 1.208 22 C 0.057 3.943 23 C -0.117 4.117 24 N -0.114 5.114 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.263 0.737 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.157 4.830 -5.489 8.410 hybrid contribution 0.304 1.525 -0.858 1.776 sum 4.461 6.354 -6.347 10.028 Atomic orbital electron populations 1.21327 0.89639 1.01325 1.03223 1.21661 0.96511 0.90002 0.97588 1.21496 1.00565 0.93627 1.01933 1.22064 0.93906 1.06162 0.94383 0.84114 1.22462 0.84435 0.80326 0.77122 1.90678 1.83144 1.25741 1.40487 1.84681 1.24441 1.50924 1.71303 1.22674 1.02025 1.00923 0.91405 0.86450 1.19046 0.87875 0.81763 0.84804 1.90553 1.14004 1.74741 1.64499 1.43449 1.02355 1.23275 1.45866 1.20146 1.00883 1.18079 1.17215 0.88273 1.26233 0.95243 1.06562 0.89974 1.70814 1.37734 1.12610 1.24732 0.83872 0.77543 0.74851 0.76613 1.20730 1.20365 1.20754 1.19114 0.84031 0.99849 0.91334 1.29997 0.93165 0.93618 0.94944 1.81027 1.09093 1.10034 1.11264 0.90418 0.93585 0.91317 0.92020 0.91432 0.91780 0.73651 0.90621 0.88275 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 8.09 37.15 0.30 -1.27 16 2 C -0.06 -0.88 2.70 -154.48 -0.42 -1.30 16 3 C -0.12 -1.58 9.00 37.16 0.33 -1.25 16 4 C -0.15 -2.34 5.61 -91.73 -0.51 -2.85 16 5 H 0.14 2.37 8.05 -51.93 -0.42 1.95 16 6 C 0.51 7.68 7.16 36.01 0.26 7.94 16 7 O -0.51 -8.28 15.56 -18.75 -0.29 -8.57 16 8 O -0.50 -6.68 13.42 -39.26 -0.53 -7.21 16 9 C -0.15 -2.52 4.55 -91.77 -0.42 -2.94 16 10 H 0.12 1.75 6.55 -51.93 -0.34 1.41 16 11 C 0.48 10.23 7.32 -10.99 -0.08 10.15 16 12 O -0.56 -13.53 12.81 5.54 0.07 -13.46 16 13 N -0.43 -9.55 2.56 -117.94 -0.30 -9.85 16 14 C -0.44 -11.04 8.90 -14.93 -0.13 -11.18 16 15 H 0.10 2.76 7.63 -52.49 -0.40 2.36 16 16 C 0.03 0.79 4.25 -17.47 -0.07 0.72 16 17 N -0.83 -20.04 12.23 55.50 0.68 -19.36 16 18 Si 1.05 21.90 30.06 -169.99 -5.11 16.79 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.18 3.43 5.22 -6.83 -0.04 3.40 16 23 C 0.20 3.89 15.50 -20.74 -0.32 3.57 16 24 N -0.44 -8.80 18.54 42.17 0.78 -8.01 16 25 H 0.08 1.35 7.25 -51.92 -0.38 0.98 16 26 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 27 H 0.07 1.20 7.02 -51.93 -0.36 0.84 16 28 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.41 3.46 9.10 45.56 0.41 3.87 16 32 H 0.28 6.78 8.50 -40.82 -0.35 6.43 16 33 H 0.10 1.48 6.30 -51.93 -0.33 1.16 16 34 H 0.13 2.54 5.68 -51.93 -0.30 2.24 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -29.56 300.81 -4.07 -33.63 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.80 Total: 6.53 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.10 Total: 4.99 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 1.16 Total: -37.23 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.75 Total: -29.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.11 Total: 16.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.56 -4.07 -33.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085405552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.094 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds