Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 115.54943 * 2 1 4 4 C 1.53073 * 117.51289 * 214.28305 * 2 1 3 5 5 H 1.08996 * 117.51441 * 359.97438 * 4 2 1 6 6 C 1.50704 * 117.49464 * 145.03421 * 4 2 1 7 7 O 1.20821 * 119.99949 * 317.29943 * 6 4 2 8 8 O 1.34232 * 119.99759 * 137.29599 * 6 4 2 9 9 C 1.52997 * 117.50082 * 145.67438 * 2 1 3 10 10 H 1.09004 * 117.49945 * 215.00339 * 9 2 1 11 11 C 1.50701 * 117.50180 * 359.97438 * 9 2 1 12 12 O 1.21295 * 119.99445 * 359.91506 * 11 9 2 13 13 N 1.34774 * 120.00183 * 179.91366 * 11 9 2 14 14 C 1.37108 * 119.99819 * 179.97438 * 13 11 9 15 15 H 1.08001 * 119.99589 * 23.64858 * 14 13 11 16 16 C 1.38943 * 119.99915 * 203.64555 * 14 13 11 17 17 N 1.31414 * 119.99885 * 46.95606 * 16 14 13 18 18 Si 1.86797 * 120.00115 * 226.95309 * 16 14 13 19 19 H 1.48499 * 109.47034 * 89.99744 * 18 16 14 20 20 H 1.48501 * 109.47153 * 330.00478 * 18 16 14 21 21 H 1.48499 * 109.47257 * 210.00120 * 18 16 14 22 22 C 1.46491 * 120.00018 * 0.02562 * 13 11 9 23 23 C 1.47203 * 109.47106 * 276.73169 * 22 13 11 24 24 N 5.24309 * 121.75222 * 178.95437 * 2 1 3 25 25 H 1.09008 * 109.46922 * 274.32635 * 1 2 3 26 26 H 1.08996 * 109.47345 * 34.32727 * 1 2 3 27 27 H 1.09003 * 109.47138 * 154.33051 * 1 2 3 28 28 H 1.09000 * 109.47397 * 196.06179 * 3 2 1 29 29 H 1.09001 * 109.47390 * 316.06526 * 3 2 1 30 30 H 1.09004 * 109.47078 * 76.06754 * 3 2 1 31 31 H 0.96700 * 116.99462 * 179.97438 * 8 6 4 32 32 H 0.97000 * 120.00223 * 6.12813 * 17 16 14 33 33 H 1.08993 * 109.47453 * 36.73768 * 22 13 11 34 34 H 1.09003 * 109.47071 * 156.73359 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2371 -1.1218 -0.7647 5 1 1.6123 -1.8600 -1.2675 6 6 3.5301 -0.7819 -1.4603 7 8 3.6306 0.2521 -2.0770 8 8 4.5700 -1.6281 -1.3945 9 6 2.2364 -1.1207 0.7653 10 1 3.1713 -0.8747 1.2688 11 6 1.3721 -2.1399 1.4619 12 8 0.1638 -2.0514 1.4039 13 7 1.9417 -3.1496 2.1492 14 6 1.1552 -4.0765 2.7834 15 1 0.1429 -4.2462 2.4475 16 6 1.6607 -4.7976 3.8582 17 7 2.3056 -4.1771 4.8206 18 14 1.4234 -6.6488 3.9353 19 1 2.5652 -7.3225 3.2663 20 1 0.1599 -7.0150 3.2462 21 1 1.3563 -7.0806 5.3546 22 6 3.4010 -3.2561 2.2196 23 6 3.9023 -3.9341 1.0130 24 7 4.2891 -4.4576 0.0814 25 1 -0.3633 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3633 -0.9263 -0.4452 28 1 3.2375 1.2823 -0.2843 29 1 1.6788 2.0274 -0.7130 30 1 2.1233 1.8149 0.9975 31 1 5.3782 -1.3670 -1.8568 32 1 2.3523 -3.2083 4.8270 33 1 3.8355 -2.2586 2.2829 34 1 3.6812 -3.8310 3.1023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085405552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -77.130496 kcal Electronic energy + Delta-G solvation = -20810.995834 eV Core-core repulsion = 17516.999998 eV Total energy + Delta-G solvation = -3293.995836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01542 -40.68534 -38.67432 -37.52168 -37.06838 -36.36267 -33.89204 -30.81904 -29.30378 -28.42301 -27.58405 -25.69110 -23.16894 -21.23624 -20.09332 -19.79794 -19.12193 -18.60025 -18.11851 -17.20335 -16.99957 -16.64547 -15.68232 -15.31745 -15.07076 -14.97867 -14.94443 -14.60371 -14.09780 -14.06698 -13.63118 -13.59483 -13.30910 -13.25182 -12.91348 -12.85639 -12.70570 -12.40058 -12.34295 -12.09056 -11.95972 -11.69845 -11.32277 -10.98512 -10.82280 -10.19682 -10.00073 -8.93037 -5.93721 0.96551 1.40624 1.52692 1.61709 1.75377 1.83441 1.85349 1.87773 2.39359 2.53500 2.72252 2.92052 3.25362 3.47796 3.57114 3.69559 3.90720 4.07607 4.27882 4.36010 4.48500 4.54690 4.66952 4.82345 4.95432 5.00105 5.04958 5.22624 5.46668 5.53940 5.78068 6.01162 6.45879 6.60163 6.91703 6.92493 7.30223 7.87917 8.31866 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.007040 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.981612 B = 3976.476587 C = 4700.206831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.050 4.050 3 C -0.113 4.113 4 C -0.146 4.146 5 H 0.127 0.873 6 C 0.526 3.474 7 O -0.522 6.522 8 O -0.504 6.504 9 C -0.153 4.153 10 H 0.144 0.856 11 C 0.472 3.528 12 O -0.593 6.593 13 N -0.443 5.443 14 C -0.465 4.465 15 H 0.060 0.940 16 C 0.015 3.985 17 N -0.833 5.833 18 Si 1.084 2.916 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.274 1.274 22 C 0.189 3.811 23 C 0.212 3.788 24 N -0.450 5.450 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.428 0.572 32 H 0.280 0.720 33 H 0.141 0.859 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 7.613 -5.344 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.050 4.050 3 C -0.170 4.170 4 C -0.165 4.165 5 H 0.145 0.855 6 C 0.369 3.631 7 O -0.412 6.412 8 O -0.318 6.318 9 C -0.174 4.174 10 H 0.162 0.838 11 C 0.263 3.737 12 O -0.478 6.478 13 N -0.162 5.162 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.462 5.462 18 Si 0.906 3.094 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.200 1.200 22 C 0.062 3.938 23 C -0.107 4.107 24 N -0.129 5.129 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.289 0.711 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.847 5.707 -5.796 10.018 hybrid contribution -0.243 1.266 -0.795 1.515 sum 5.604 6.974 -6.590 11.112 Atomic orbital electron populations 1.21235 0.90345 1.01265 1.02257 1.21807 0.96121 0.90987 0.96117 1.21494 1.00255 0.91980 1.03243 1.22011 0.94872 1.06168 0.93494 0.85515 1.22001 0.84254 0.80128 0.76690 1.90682 1.83325 1.26211 1.40980 1.84625 1.25165 1.50488 1.71496 1.22544 1.02551 1.00453 0.91832 0.83838 1.19807 0.88006 0.81953 0.83954 1.90534 1.16029 1.75676 1.65513 1.43535 1.03711 1.23110 1.45856 1.19871 1.00374 1.20404 1.18343 0.92195 1.27044 0.94582 1.08731 0.89264 1.70881 1.38112 1.12498 1.24699 0.83351 0.77541 0.71568 0.76908 1.19721 1.20790 1.19953 1.19280 0.81961 1.01933 0.90593 1.30036 0.92733 0.93179 0.94776 1.81033 1.09649 1.10494 1.11743 0.92281 0.90787 0.93731 0.92028 0.90366 0.90248 0.71069 0.91004 0.84197 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 8.09 71.98 0.58 -2.38 16 2 C -0.05 -1.45 2.70 -52.16 -0.14 -1.60 16 3 C -0.11 -2.65 9.00 71.98 0.65 -2.00 16 4 C -0.15 -4.48 5.61 -11.52 -0.06 -4.54 16 5 H 0.13 4.26 8.05 -2.39 -0.02 4.24 16 6 C 0.53 14.41 7.16 71.24 0.51 14.92 16 7 O -0.52 -15.44 15.56 21.98 0.34 -15.09 16 8 O -0.50 -11.95 13.42 -51.44 -0.69 -12.64 16 9 C -0.15 -4.94 4.55 -11.54 -0.05 -4.99 16 10 H 0.14 3.83 6.55 -2.39 -0.02 3.82 16 11 C 0.47 20.42 7.32 87.66 0.64 21.06 16 12 O -0.59 -29.88 12.81 -3.08 -0.04 -29.92 16 13 N -0.44 -19.69 2.56 -645.43 -1.65 -21.35 16 14 C -0.46 -23.95 8.90 84.04 0.75 -23.20 16 15 H 0.06 3.51 7.63 -2.91 -0.02 3.49 16 16 C 0.02 0.74 4.25 84.92 0.36 1.10 16 17 N -0.83 -39.77 12.23 21.66 0.26 -39.51 16 18 Si 1.08 44.06 30.06 68.60 2.06 46.12 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 C 0.19 6.76 5.22 84.58 0.44 7.20 16 23 C 0.21 7.82 15.50 89.44 1.39 9.20 16 24 N -0.45 -17.48 18.54 20.01 0.37 -17.11 16 25 H 0.06 2.08 7.25 -2.38 -0.02 2.06 16 26 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 27 H 0.04 1.60 7.02 -2.39 -0.02 1.58 16 28 H 0.06 1.47 5.65 -2.39 -0.01 1.46 16 29 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.43 5.89 9.10 -74.06 -0.67 5.22 16 32 H 0.28 13.28 8.50 -92.71 -0.79 12.50 16 33 H 0.14 3.78 6.30 -2.39 -0.02 3.76 16 34 H 0.12 4.64 5.68 -2.39 -0.01 4.63 16 Total: -1.00 -63.87 300.81 6.18 -57.68 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.47 Total: 17.05 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 5.06 Total: 14.76 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.02 Total: -77.96 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.39 Total: -57.65 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.06 Total: 46.12 kcal Total: -63.87 6.18 -57.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085405552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.447 kcal (2) G-P(sol) polarization free energy of solvation -63.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds