Wall clock time and date at job start Mon Mar 30 2020 04:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 115.55031 * 2 1 4 4 C 1.52999 * 117.49823 * 145.67219 * 2 1 3 5 5 H 1.09000 * 117.50062 * 359.97262 * 4 2 1 6 6 C 1.50697 * 117.49667 * 214.97934 * 4 2 1 7 7 O 1.20828 * 120.00169 * 300.04723 * 6 4 2 8 8 O 1.34231 * 120.00007 * 120.32566 * 6 4 2 9 9 C 1.52997 * 60.03201 * 107.47762 * 4 2 1 10 10 H 1.08995 * 117.49765 * 107.50434 * 9 4 2 11 11 C 1.50704 * 117.49450 * 252.52066 * 9 4 2 12 12 O 1.21292 * 120.00002 * 68.61563 * 11 9 4 13 13 N 1.34779 * 120.00216 * 248.60728 * 11 9 4 14 14 C 1.37089 * 120.00116 * 180.02562 * 13 11 9 15 15 H 1.07997 * 120.00127 * 14.89518 * 14 13 11 16 16 C 1.38953 * 119.99941 * 194.89803 * 14 13 11 17 17 N 1.31413 * 119.99984 * 18.44555 * 16 14 13 18 18 Si 1.86796 * 120.00075 * 198.44870 * 16 14 13 19 19 H 1.48498 * 109.47221 * 59.99835 * 18 16 14 20 20 H 1.48504 * 109.47445 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47320 * 299.99835 * 18 16 14 22 22 C 1.46506 * 119.99480 * 0.02562 * 13 11 9 23 23 C 1.47201 * 109.46825 * 84.08372 * 22 13 11 24 24 N 5.26960 * 121.56648 * 181.25950 * 2 1 3 25 25 H 1.09003 * 109.47043 * 325.71913 * 1 2 3 26 26 H 1.08994 * 109.47069 * 85.71820 * 1 2 3 27 27 H 1.08999 * 109.47250 * 205.72369 * 1 2 3 28 28 H 1.09005 * 109.47132 * 210.29504 * 3 2 1 29 29 H 1.09002 * 109.47447 * 330.29544 * 3 2 1 30 30 H 1.09003 * 109.47271 * 90.29445 * 3 2 1 31 31 H 0.96708 * 117.00168 * 179.97438 * 8 6 4 32 32 H 0.97004 * 120.00144 * 180.02562 * 17 16 14 33 33 H 1.08998 * 109.46495 * 204.08075 * 22 13 11 34 34 H 1.08997 * 109.47070 * 324.07710 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 1.6113 -1.8579 1.2692 6 6 3.5293 -0.7806 1.4610 7 8 4.4694 -0.3706 0.8223 8 8 3.6382 -0.9385 2.7896 9 6 2.2367 -1.1221 -0.7646 10 1 3.1719 -0.8770 -1.2680 11 6 1.3720 -2.1421 -1.4596 12 8 0.1637 -2.0544 -1.4001 13 7 1.9413 -3.1517 -2.1475 14 6 1.1547 -4.0793 -2.7801 15 1 0.1047 -3.8806 -2.9362 16 6 1.7084 -5.2753 -3.2205 17 7 2.8579 -5.6858 -2.7336 18 14 0.8188 -6.2993 -4.5048 19 1 0.6537 -5.5017 -5.7464 20 1 1.6125 -7.5187 -4.8022 21 1 -0.5167 -6.6915 -3.9871 22 6 3.4008 -3.2578 -2.2190 23 6 3.9014 -3.9531 -1.0220 24 7 4.2886 -4.4888 -0.0987 25 1 -0.3633 0.8492 0.5788 26 1 -0.3633 0.0767 -1.0247 27 1 -0.3634 -0.9258 0.4460 28 1 3.1472 1.3254 -0.5184 29 1 1.5413 2.0932 -0.5092 30 1 2.3514 1.7059 1.0277 31 1 4.4871 -0.7075 3.1910 32 1 3.2446 -6.5205 -3.0413 33 1 3.6808 -3.8203 -3.1096 34 1 3.8356 -2.2596 -2.2680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085405556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:54 Heat of formation + Delta-G solvation = -79.572866 kcal Electronic energy + Delta-G solvation = -20797.184687 eV Core-core repulsion = 17503.082942 eV Total energy + Delta-G solvation = -3294.101745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98545 -40.61649 -38.61473 -37.44892 -36.92415 -36.12659 -33.75051 -30.74829 -29.32137 -28.37575 -27.65987 -25.96408 -23.08566 -20.83315 -20.06213 -19.58815 -19.21974 -18.35048 -18.03761 -17.31712 -16.70423 -16.39734 -15.96732 -15.40565 -14.91121 -14.83859 -14.73320 -14.49302 -14.05796 -13.82952 -13.55105 -13.41235 -13.31255 -13.13580 -12.96140 -12.80917 -12.61617 -12.37689 -12.33478 -12.16121 -12.08125 -11.63548 -11.36085 -11.09633 -10.95688 -10.21052 -9.94106 -8.39350 -5.96362 0.89577 1.38335 1.48837 1.57735 1.65256 1.90789 2.04956 2.22509 2.34398 2.66323 3.01681 3.03678 3.43974 3.59993 3.63361 3.81801 3.99792 4.09921 4.30117 4.51585 4.62280 4.72696 4.80673 4.94245 4.99476 5.07591 5.10465 5.29479 5.47532 5.51321 5.60001 5.99932 6.37988 6.94278 6.94469 7.09467 7.32840 7.89434 8.62925 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.006978 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.025727 B = 4011.719993 C = 4801.162041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.040 4.040 3 C -0.117 4.117 4 C -0.157 4.157 5 H 0.117 0.883 6 C 0.521 3.479 7 O -0.529 6.529 8 O -0.508 6.508 9 C -0.146 4.146 10 H 0.141 0.859 11 C 0.477 3.523 12 O -0.591 6.591 13 N -0.448 5.448 14 C -0.337 4.337 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.897 5.897 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.219 3.781 23 C 0.259 3.741 24 N -0.507 5.507 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.430 0.570 32 H 0.275 0.725 33 H 0.134 0.866 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 11.830 2.902 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.174 4.174 4 C -0.177 4.177 5 H 0.135 0.865 6 C 0.365 3.635 7 O -0.419 6.419 8 O -0.322 6.322 9 C -0.167 4.167 10 H 0.159 0.841 11 C 0.266 3.734 12 O -0.475 6.475 13 N -0.167 5.167 14 C -0.464 4.464 15 H 0.109 0.891 16 C -0.199 4.199 17 N -0.536 5.536 18 Si 0.815 3.185 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.207 1.207 22 C 0.092 3.908 23 C -0.059 4.059 24 N -0.188 5.188 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.292 0.708 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.828 10.906 3.904 11.727 hybrid contribution 0.202 -1.083 -0.479 1.202 sum 2.030 9.823 3.426 10.599 Atomic orbital electron populations 1.21298 0.89734 1.01528 1.02658 1.21856 0.96215 0.90562 0.95409 1.21510 1.00861 0.91876 1.03105 1.21910 0.96224 1.06650 0.92885 0.86525 1.21991 0.88109 0.72766 0.80635 1.90669 1.40339 1.43895 1.66959 1.84467 1.45049 1.80307 1.22381 1.22554 1.02479 1.00446 0.91243 0.84130 1.19658 0.87969 0.84268 0.81466 1.90527 1.15481 1.77159 1.64357 1.43751 1.04508 1.23521 1.44954 1.19705 0.94968 0.97422 1.34335 0.89142 1.25934 0.97425 0.97170 0.99377 1.69952 1.20119 1.22779 1.40714 0.85018 0.77585 0.77200 0.78705 1.18521 1.20528 1.20683 1.19134 0.80824 0.99170 0.91676 1.29758 0.91435 0.91143 0.93521 1.80851 1.11161 1.12331 1.14435 0.90278 0.91746 0.93728 0.91536 0.89011 0.91078 0.70803 0.91481 0.84867 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.82 8.03 71.98 0.58 -2.24 16 2 C -0.04 -1.14 2.70 -52.16 -0.14 -1.28 16 3 C -0.12 -2.55 8.69 71.98 0.63 -1.93 16 4 C -0.16 -5.13 5.65 -11.54 -0.07 -5.20 16 5 H 0.12 4.21 8.05 -2.39 -0.02 4.19 16 6 C 0.52 15.71 7.28 71.23 0.52 16.23 16 7 O -0.53 -17.17 16.08 21.96 0.35 -16.82 16 8 O -0.51 -12.40 13.42 -51.43 -0.69 -13.09 16 9 C -0.15 -5.07 4.33 -11.52 -0.05 -5.12 16 10 H 0.14 4.45 5.98 -2.39 -0.01 4.44 16 11 C 0.48 20.98 7.33 87.66 0.64 21.62 16 12 O -0.59 -28.93 12.73 -3.07 -0.04 -28.97 16 13 N -0.45 -20.75 2.60 -645.41 -1.68 -22.43 16 14 C -0.34 -17.20 9.40 84.04 0.79 -16.41 16 15 H 0.09 4.89 7.33 -2.91 -0.02 4.87 16 16 C 0.00 0.12 4.98 84.93 0.42 0.54 16 17 N -0.90 -44.42 9.23 21.66 0.20 -44.22 16 18 Si 0.99 39.60 29.59 68.60 2.03 41.63 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 C 0.22 8.81 4.91 84.57 0.42 9.23 16 23 C 0.26 11.73 13.66 89.45 1.22 12.95 16 24 N -0.51 -24.64 18.53 20.00 0.37 -24.27 16 25 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 26 H 0.06 2.10 7.26 -2.39 -0.02 2.08 16 27 H 0.04 1.54 7.02 -2.39 -0.02 1.52 16 28 H 0.07 1.53 7.32 -2.38 -0.02 1.51 16 29 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 30 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 31 H 0.43 6.09 9.10 -74.05 -0.67 5.41 16 32 H 0.28 13.18 8.31 -92.70 -0.77 12.41 16 33 H 0.13 5.51 6.13 -2.39 -0.01 5.50 16 34 H 0.12 3.88 6.26 -2.39 -0.01 3.87 16 Total: -1.00 -65.51 297.41 5.99 -59.53 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.48 Total: 20.25 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 4.96 Total: 28.39 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.11 Total: -90.91 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -0.38 Total: -58.88 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -65.51 5.99 -59.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085405556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.045 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds