Wall clock time and date at job start Mon Mar 30 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 115.55861 * 2 1 4 4 C 1.53067 * 117.51625 * 214.29508 * 2 1 3 5 5 H 1.09004 * 117.49726 * 145.03715 * 4 2 1 6 6 C 1.50697 * 117.53286 * 359.97438 * 4 2 1 7 7 O 1.20823 * 119.99994 * 57.90202 * 6 4 2 8 8 O 1.34229 * 119.99861 * 237.89949 * 6 4 2 9 9 C 1.53001 * 117.49925 * 145.68297 * 2 1 3 10 10 H 1.08998 * 117.49789 * 215.00291 * 9 2 1 11 11 C 1.50694 * 117.49977 * 0.02562 * 9 2 1 12 12 O 1.21293 * 119.99804 * 359.91109 * 11 9 2 13 13 N 1.34776 * 120.00124 * 179.90886 * 11 9 2 14 14 C 1.37100 * 119.99773 * 179.72369 * 13 11 9 15 15 H 1.08003 * 120.00456 * 337.82067 * 14 13 11 16 16 C 1.38950 * 119.99592 * 157.81899 * 14 13 11 17 17 N 1.31408 * 120.00078 * 350.23887 * 16 14 13 18 18 Si 1.86799 * 120.00006 * 170.24649 * 16 14 13 19 19 H 1.48498 * 109.47371 * 89.99521 * 18 16 14 20 20 H 1.48501 * 109.47165 * 210.00082 * 18 16 14 21 21 H 1.48504 * 109.46863 * 329.99600 * 18 16 14 22 22 C 1.46497 * 120.00084 * 0.02562 * 13 11 9 23 23 C 1.47206 * 109.46717 * 277.24830 * 22 13 11 24 24 N 5.22731 * 121.88599 * 179.09062 * 2 1 3 25 25 H 1.08993 * 109.47341 * 277.12343 * 1 2 3 26 26 H 1.09000 * 109.47204 * 37.12647 * 1 2 3 27 27 H 1.09006 * 109.47030 * 157.11918 * 1 2 3 28 28 H 1.09000 * 109.46653 * 205.68721 * 3 2 1 29 29 H 1.09002 * 109.47265 * 325.68761 * 3 2 1 30 30 H 1.09002 * 109.47236 * 85.68418 * 3 2 1 31 31 H 0.96708 * 116.99753 * 180.02562 * 8 6 4 32 32 H 0.97003 * 119.99651 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.46791 * 37.24465 * 22 13 11 34 34 H 1.08995 * 109.47077 * 157.24745 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7649 5 1 3.1724 -0.8756 -1.2679 6 6 1.3739 -2.1423 -1.4604 7 8 0.5717 -1.7891 -2.2920 8 8 1.4961 -3.4439 -1.1559 9 6 2.2365 -1.1209 0.7651 10 1 3.1713 -0.8749 1.2687 11 6 1.3721 -2.1408 1.4605 12 8 0.1638 -2.0527 1.4019 13 7 1.9416 -3.1507 2.1476 14 6 1.1552 -4.0753 2.7850 15 1 0.1378 -3.8280 3.0502 16 6 1.6671 -5.3306 3.0899 17 7 2.8299 -5.7019 2.6032 18 14 0.7022 -6.4904 4.1913 19 1 -0.1946 -7.3321 3.3591 20 1 1.6443 -7.3608 4.9397 21 1 -0.1103 -5.7003 5.1510 22 6 3.4010 -3.2567 2.2189 23 6 3.9043 -3.9228 1.0065 24 7 4.2912 -4.4380 0.0704 25 1 -0.3634 0.1274 1.0197 26 1 -0.3633 0.8194 -0.6203 27 1 -0.3633 -0.9469 -0.3996 28 1 3.1823 1.3085 -0.4455 29 1 1.5811 2.0744 -0.5793 30 1 2.2771 1.7415 1.0248 31 1 0.9211 -4.0612 -1.6287 32 1 3.1873 -6.5781 2.8164 33 1 3.8346 -2.2593 2.2922 34 1 3.6805 -3.8398 3.0964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085405557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:57 Heat of formation + Delta-G solvation = -55.962753 kcal Electronic energy + Delta-G solvation = -21318.577209 eV Core-core repulsion = 18025.499275 eV Total energy + Delta-G solvation = -3293.077934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51738 -38.77578 -37.02484 -35.56847 -35.40879 -34.18086 -31.83384 -29.51818 -27.49925 -27.17390 -25.80503 -24.20698 -21.79195 -19.37179 -18.35253 -17.75019 -17.43919 -16.87658 -16.29279 -15.54205 -15.39988 -14.56057 -14.18601 -13.72305 -13.46701 -13.32147 -13.21372 -12.91020 -12.57615 -12.27661 -11.94036 -11.88692 -11.67088 -11.49493 -11.24022 -11.15768 -11.13013 -10.84522 -10.51117 -10.43838 -10.34246 -10.20893 -9.81799 -9.56682 -9.22917 -8.45605 -7.98990 -6.46178 -4.03979 2.63388 3.04942 3.20356 3.24113 3.26082 3.47505 3.70132 4.06577 4.12912 4.21272 4.61326 4.82233 4.89969 5.02031 5.21518 5.26061 5.36696 5.58491 5.71257 5.77740 5.81067 6.00880 6.06196 6.16926 6.24716 6.35113 6.49021 6.64762 6.89340 7.05224 7.44805 7.92491 8.29147 8.40776 8.89628 9.00319 9.19564 9.74606 10.58015 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.007656 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.450435 B = 3656.508861 C = 3869.900993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.066 4.066 3 C -0.114 4.114 4 C -0.140 4.140 5 H 0.141 0.859 6 C 0.520 3.480 7 O -0.523 6.523 8 O -0.487 6.487 9 C -0.154 4.154 10 H 0.124 0.876 11 C 0.488 3.512 12 O -0.565 6.565 13 N -0.431 5.431 14 C -0.303 4.303 15 H 0.105 0.895 16 C 0.032 3.968 17 N -0.884 5.884 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.221 3.779 23 C 0.250 3.750 24 N -0.471 5.471 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.405 0.595 32 H 0.272 0.728 33 H 0.075 0.925 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 9.017 -0.432 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C -0.171 4.171 4 C -0.160 4.160 5 H 0.158 0.842 6 C 0.362 3.638 7 O -0.413 6.413 8 O -0.296 6.296 9 C -0.175 4.175 10 H 0.141 0.859 11 C 0.276 3.724 12 O -0.448 6.448 13 N -0.150 5.150 14 C -0.430 4.430 15 H 0.122 0.878 16 C -0.171 4.171 17 N -0.523 5.523 18 Si 0.757 3.243 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.094 3.906 23 C -0.068 4.068 24 N -0.151 5.151 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.262 0.738 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.894 8.459 -1.795 9.118 hybrid contribution -0.609 -1.209 0.492 1.440 sum 2.285 7.250 -1.303 7.712 Atomic orbital electron populations 1.21404 0.90161 1.02250 1.02250 1.21655 0.96595 0.89948 0.98502 1.21398 0.99863 0.93386 1.02437 1.22040 1.01418 0.98518 0.93978 0.84197 1.22094 0.80420 0.82320 0.78917 1.90647 1.35925 1.81451 1.33267 1.84703 1.62407 1.17666 1.64816 1.22651 1.02243 1.00385 0.92251 0.85870 1.18983 0.87735 0.84080 0.81642 1.90562 1.14172 1.76638 1.63425 1.43415 1.03496 1.23745 1.44372 1.19678 0.97992 0.92266 1.33067 0.87761 1.25312 0.96755 0.97161 0.97890 1.69760 1.18551 1.21290 1.42715 0.85850 0.79031 0.79686 0.79683 1.20497 1.20824 1.19373 1.18777 0.82196 0.97130 0.92544 1.29126 0.92282 0.91886 0.93547 1.80863 1.10335 1.10930 1.12956 0.91079 0.93703 0.90949 0.92208 0.91600 0.91340 0.73760 0.91707 0.90682 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 7.67 37.16 0.29 -1.53 16 2 C -0.07 -1.02 2.70 -154.47 -0.42 -1.44 16 3 C -0.11 -1.26 9.85 37.16 0.37 -0.90 16 4 C -0.14 -2.33 5.88 -91.74 -0.54 -2.87 16 5 H 0.14 1.93 8.05 -51.93 -0.42 1.52 16 6 C 0.52 10.14 5.86 36.00 0.21 10.35 16 7 O -0.52 -10.98 16.59 -18.75 -0.31 -11.29 16 8 O -0.49 -9.78 12.52 -39.26 -0.49 -10.28 16 9 C -0.15 -2.60 4.83 -91.77 -0.44 -3.05 16 10 H 0.12 1.70 6.56 -51.93 -0.34 1.36 16 11 C 0.49 10.54 5.69 -10.99 -0.06 10.47 16 12 O -0.57 -13.87 12.65 5.55 0.07 -13.80 16 13 N -0.43 -9.66 2.61 -117.93 -0.31 -9.97 16 14 C -0.30 -7.52 9.30 -14.93 -0.14 -7.66 16 15 H 0.10 2.74 7.40 -52.48 -0.39 2.35 16 16 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 17 N -0.88 -21.57 9.11 55.50 0.51 -21.06 16 18 Si 0.93 19.47 29.56 -169.99 -5.03 14.44 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C 0.22 4.28 4.90 -6.83 -0.03 4.25 16 23 C 0.25 5.35 13.44 -20.75 -0.28 5.08 16 24 N -0.47 -10.80 18.54 42.17 0.78 -10.02 16 25 H 0.07 1.29 7.43 -51.93 -0.39 0.90 16 26 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 27 H 0.07 1.52 4.73 -51.93 -0.25 1.27 16 28 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 29 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 6.73 9.10 45.56 0.41 7.15 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.08 1.11 6.33 -51.93 -0.33 0.78 16 34 H 0.13 2.66 6.32 -51.93 -0.33 2.33 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -31.30 294.33 -4.30 -35.60 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.81 Total: 8.55 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.14 Total: 13.38 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.98 Total: -41.05 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.73 Total: -35.36 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.30 -4.30 -35.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085405557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.360 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds