Wall clock time and date at job start Mon Mar 30 2020 04:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 N 1.46499 * 109.47164 * 179.97438 * 14 12 2 16 16 C 1.33869 * 122.76226 * 269.71182 * 15 14 12 17 17 O 1.21226 * 125.39798 * 359.97438 * 16 15 14 18 18 C 1.51325 * 109.20771 * 179.84165 * 16 15 14 19 19 H 1.09000 * 118.23052 * 221.51943 * 18 16 15 20 20 C 1.55418 * 118.40321 * 62.47147 * 18 16 15 21 21 C 1.52999 * 60.00159 * 270.69207 * 20 18 16 22 22 H 1.09004 * 119.70830 * 247.32388 * 21 20 18 23 23 C 1.33877 * 122.76297 * 89.99645 * 15 14 12 24 24 O 1.21230 * 125.39723 * 359.97438 * 23 15 14 25 25 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 26 26 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 27 27 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 28 28 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 29 29 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47321 * 300.00085 * 14 12 2 32 32 H 1.09000 * 109.47711 * 59.99662 * 14 12 2 33 33 H 1.08998 * 117.12974 * 163.10086 * 20 18 16 34 34 H 1.09003 * 118.04757 * 17.87688 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 4.1796 4.7035 3.4339 10 1 2.1392 3.5947 4.1336 11 1 4.2397 2.3829 4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3373 -3.5858 -0.0018 16 6 2.8028 -4.1397 -1.1281 17 8 2.5043 -3.8003 -2.2529 18 6 3.7634 -5.2543 -0.7747 19 1 4.6793 -5.3498 -1.3578 20 6 3.2200 -6.4741 0.0206 21 6 3.7645 -5.2549 0.7676 22 1 4.6823 -5.3431 1.3491 23 6 2.8090 -4.1370 1.1234 24 8 2.5172 -3.7944 2.2491 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1499 1.1383 -0.5140 30 1 4.0296 4.4443 0.8503 31 1 0.7590 -2.5302 0.8897 32 1 0.7583 -2.5299 -0.8902 33 1 3.8294 -7.3778 0.0223 34 1 2.1420 -6.6346 0.0394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085416115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:52 Heat of formation + Delta-G solvation = -47.103970 kcal Electronic energy + Delta-G solvation = -20332.761082 eV Core-core repulsion = 17040.067294 eV Total energy + Delta-G solvation = -3292.693788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37293 -38.94438 -38.52367 -36.84044 -35.21405 -34.69897 -32.63690 -29.48138 -27.46975 -25.78939 -25.73244 -24.08896 -22.56821 -22.11489 -19.75269 -18.68731 -17.58999 -16.79941 -16.61929 -16.39926 -15.99317 -15.34884 -14.84612 -14.70059 -14.64683 -14.20213 -14.01325 -13.99009 -12.89228 -12.88155 -12.73007 -12.21675 -11.91357 -11.82578 -11.33008 -11.20728 -11.14528 -10.91410 -10.58763 -10.38450 -10.23401 -10.17640 -10.15165 -9.66089 -8.92501 -8.43520 -7.73143 -6.04716 -4.09680 1.25551 2.26878 2.59643 3.00522 3.23639 3.33095 3.36986 3.41823 3.84417 3.88811 4.01235 4.04972 4.27399 4.45056 4.93282 4.98371 5.07737 5.16890 5.18480 5.29775 5.31749 5.37467 5.46600 5.59401 5.87183 6.15845 6.73848 6.97348 7.24188 7.39689 7.46580 7.70003 7.91028 8.21265 8.28935 8.83020 8.98467 9.55232 11.03453 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.005249 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.878786 B = 5333.434557 C = 5726.881212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.533 6.533 14 C 0.080 3.920 15 N -0.554 5.554 16 C 0.559 3.441 17 O -0.472 6.472 18 C -0.198 4.198 19 H 0.162 0.838 20 C -0.084 4.084 21 C -0.193 4.193 22 H 0.160 0.840 23 C 0.556 3.444 24 O -0.466 6.466 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -19.494 -2.345 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.278 3.722 13 O -0.410 6.410 14 C -0.045 4.045 15 N -0.296 5.296 16 C 0.347 3.653 17 O -0.342 6.342 18 C -0.219 4.219 19 H 0.179 0.821 20 C -0.121 4.121 21 C -0.214 4.214 22 H 0.177 0.823 23 C 0.344 3.656 24 O -0.336 6.336 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.357 -18.850 -2.388 19.494 hybrid contribution 0.245 0.687 1.010 1.246 sum -4.111 -18.163 -1.378 18.673 Atomic orbital electron populations 1.21722 0.81117 1.02882 1.00765 1.48123 1.06358 1.07554 1.70862 1.19333 0.92577 0.77695 0.97662 1.21388 1.36802 1.06359 0.92175 0.92451 1.24935 0.95249 0.96324 0.97532 1.69927 1.38281 1.14336 1.30827 0.86537 0.78424 0.77793 0.84565 1.21122 1.20172 1.20162 1.20296 0.88415 0.85139 0.78341 1.90688 1.13561 1.86855 1.49865 1.21756 0.91477 0.84982 1.06277 1.46157 1.42452 1.31906 1.09111 1.19729 0.79472 0.82390 0.83668 1.90755 1.57710 1.64605 1.21165 1.23908 1.03523 0.99331 0.95135 0.82092 1.23404 1.02823 0.91058 0.94853 1.23524 1.03536 0.98938 0.95399 0.82278 1.19766 0.79543 0.82503 0.83744 1.90782 1.57553 1.64211 1.21056 0.93251 0.92524 0.90243 0.94682 0.93823 0.92625 0.86267 0.86367 0.85023 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.86 16 2 N -0.60 -13.05 2.86 -182.95 -0.52 -13.57 16 3 C 0.25 6.62 5.16 -5.20 -0.03 6.59 16 4 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.49 10.80 7.74 -10.99 -0.09 10.71 16 13 O -0.53 -14.06 16.01 5.56 0.09 -13.97 16 14 C 0.08 1.27 4.59 -5.20 -0.02 1.24 16 15 N -0.55 -8.56 2.04 -116.63 -0.24 -8.80 16 16 C 0.56 8.10 7.89 -11.08 -0.09 8.01 16 17 O -0.47 -8.16 17.47 5.60 0.10 -8.06 16 18 C -0.20 -1.89 7.26 -89.54 -0.65 -2.54 16 19 H 0.16 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.08 -0.50 10.22 -25.45 -0.26 -0.76 16 21 C -0.19 -1.88 7.06 -90.83 -0.64 -2.52 16 22 H 0.16 1.27 8.14 -51.93 -0.42 0.85 16 23 C 0.56 8.32 7.88 -11.09 -0.09 8.24 16 24 O -0.47 -8.52 17.48 5.60 0.10 -8.43 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 29 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.12 1.67 7.09 -51.93 -0.37 1.30 16 32 H 0.12 1.57 7.79 -51.93 -0.40 1.17 16 33 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -38.25 304.61 -5.83 -44.08 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.99 Total: -3.70 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -1.67 Total: 16.82 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.02 Total: -48.69 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: 0.28 Total: -30.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.25 -5.83 -44.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085416115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.025 kcal (2) G-P(sol) polarization free energy of solvation -38.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds