Wall clock time and date at job start Mon Mar 30 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 N 1.46499 * 109.47164 * 179.97438 * 14 12 2 16 16 C 1.33869 * 122.76226 * 269.71182 * 15 14 12 17 17 O 1.21226 * 125.39798 * 359.97438 * 16 15 14 18 18 C 1.51325 * 109.20771 * 179.84165 * 16 15 14 19 19 H 1.09000 * 118.23052 * 221.51943 * 18 16 15 20 20 C 1.55418 * 118.40321 * 62.47147 * 18 16 15 21 21 C 1.52999 * 60.00159 * 270.69207 * 20 18 16 22 22 H 1.09004 * 119.70830 * 247.32388 * 21 20 18 23 23 C 1.33877 * 122.76297 * 89.99645 * 15 14 12 24 24 O 1.21230 * 125.39723 * 359.97438 * 23 15 14 25 25 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 26 26 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 27 27 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 28 28 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 29 29 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47321 * 300.00085 * 14 12 2 32 32 H 1.09000 * 109.47711 * 59.99662 * 14 12 2 33 33 H 1.08998 * 117.12974 * 163.10086 * 20 18 16 34 34 H 1.09003 * 118.04757 * 17.87688 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 4.1796 4.7035 3.4339 10 1 2.1392 3.5947 4.1336 11 1 4.2397 2.3829 4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3373 -3.5858 -0.0018 16 6 2.8028 -4.1397 -1.1281 17 8 2.5043 -3.8003 -2.2529 18 6 3.7634 -5.2543 -0.7747 19 1 4.6793 -5.3498 -1.3578 20 6 3.2200 -6.4741 0.0206 21 6 3.7645 -5.2549 0.7676 22 1 4.6823 -5.3431 1.3491 23 6 2.8090 -4.1370 1.1234 24 8 2.5172 -3.7944 2.2491 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1499 1.1383 -0.5140 30 1 4.0296 4.4443 0.8503 31 1 0.7590 -2.5302 0.8897 32 1 0.7583 -2.5299 -0.8902 33 1 3.8294 -7.3778 0.0223 34 1 2.1420 -6.6346 0.0394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085416115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:51 Heat of formation + Delta-G solvation = -75.597651 kcal Electronic energy + Delta-G solvation = -20333.996661 eV Core-core repulsion = 17040.067294 eV Total energy + Delta-G solvation = -3293.929367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.43054 -40.63341 -39.72611 -37.85274 -36.82954 -36.07590 -34.80319 -31.05905 -29.17681 -27.38484 -26.74166 -25.43821 -24.11297 -23.08919 -20.93536 -20.12721 -18.82270 -18.71726 -18.26755 -17.59753 -17.40190 -16.80059 -16.44215 -16.28883 -15.73097 -15.52184 -15.33600 -15.10124 -14.55233 -14.46114 -13.91095 -13.56629 -13.46905 -13.36524 -13.21533 -12.84919 -12.61506 -12.26100 -12.10660 -11.86461 -11.79884 -11.64061 -11.31109 -11.26322 -10.70208 -10.58641 -9.57367 -8.28667 -6.44017 0.20664 1.14718 1.32280 1.37039 1.44271 1.54428 1.57412 2.25014 2.27357 2.38937 3.00916 3.09824 3.11591 3.19892 3.46723 3.66818 3.88422 3.97340 4.13348 4.34646 4.42455 4.64271 4.66516 4.80687 4.86646 4.91844 4.97568 5.12280 5.45337 5.63405 5.72220 5.97685 6.14604 6.48644 6.61379 6.65098 7.14033 7.29795 8.78717 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.005249 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.878786 B = 5333.434557 C = 5726.881212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.274 1.274 10 H -0.258 1.258 11 H -0.281 1.281 12 C 0.481 3.519 13 O -0.592 6.592 14 C 0.088 3.912 15 N -0.565 5.565 16 C 0.548 3.452 17 O -0.510 6.510 18 C -0.204 4.204 19 H 0.183 0.817 20 C -0.034 4.034 21 C -0.201 4.201 22 H 0.179 0.821 23 C 0.545 3.455 24 O -0.511 6.511 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.030 0.970 29 H -0.005 1.005 30 H 0.269 0.731 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.180 0.820 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 -22.027 -1.494 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.139 3.861 4 C -0.586 4.586 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.182 1.182 11 H -0.207 1.207 12 C 0.268 3.732 13 O -0.473 6.473 14 C -0.037 4.037 15 N -0.306 5.306 16 C 0.339 3.661 17 O -0.383 6.383 18 C -0.225 4.225 19 H 0.201 0.799 20 C -0.071 4.071 21 C -0.222 4.222 22 H 0.196 0.804 23 C 0.336 3.664 24 O -0.385 6.385 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.013 0.987 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.197 0.803 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.117 -21.413 -1.550 22.070 hybrid contribution 0.440 1.480 0.684 1.689 sum -4.677 -19.933 -0.866 20.492 Atomic orbital electron populations 1.22070 0.77203 1.04540 1.03172 1.48162 1.08825 1.06092 1.70465 1.18797 0.91058 0.80040 0.96209 1.21630 1.37412 1.06740 0.92804 0.93132 1.25869 0.94668 0.96271 1.02186 1.70043 1.38657 1.14768 1.33141 0.85455 0.78981 0.77387 0.78916 1.19861 1.18231 1.20683 1.21378 0.88190 0.86896 0.76762 1.90639 1.16325 1.87948 1.52402 1.21730 0.91299 0.82062 1.08566 1.46482 1.42588 1.31466 1.10065 1.20661 0.79411 0.83170 0.82809 1.90724 1.59209 1.66040 1.22362 1.24047 1.03366 1.00264 0.94788 0.79948 1.23838 1.04256 0.90368 0.88626 1.23644 1.03286 0.99863 0.95372 0.80356 1.20747 0.79435 0.83328 0.82895 1.90745 1.59311 1.65897 1.22517 0.90404 0.88676 0.90805 0.95202 0.98694 0.92222 0.84112 0.83545 0.80278 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.18 10.24 127.77 1.31 3.49 16 2 N -0.60 -27.09 2.86 -851.12 -2.43 -29.52 16 3 C 0.26 14.70 5.16 85.63 0.44 15.14 16 4 C -0.55 -32.90 9.39 25.60 0.24 -32.66 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.56 5.46 84.66 0.46 1.02 16 7 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 8 Si 0.97 46.35 29.54 68.60 2.03 48.37 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 C 0.48 21.65 7.74 87.66 0.68 22.33 16 13 O -0.59 -32.97 16.01 -3.03 -0.05 -33.02 16 14 C 0.09 2.76 4.59 85.63 0.39 3.15 16 15 N -0.56 -17.20 2.04 -760.73 -1.55 -18.75 16 16 C 0.55 15.48 7.89 88.00 0.69 16.17 16 17 O -0.51 -17.65 17.47 -2.86 -0.05 -17.70 16 18 C -0.20 -3.34 7.26 -10.09 -0.07 -3.41 16 19 H 0.18 2.20 8.14 -2.39 -0.02 2.18 16 20 C -0.03 -0.24 10.22 31.43 0.32 0.08 16 21 C -0.20 -3.38 7.06 -10.93 -0.08 -3.46 16 22 H 0.18 2.32 8.14 -2.38 -0.02 2.30 16 23 C 0.54 15.96 7.88 87.99 0.69 16.65 16 24 O -0.51 -18.83 17.48 -2.88 -0.05 -18.88 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 2.14 6.44 -2.39 -0.02 2.13 16 27 H 0.07 2.33 8.07 -2.38 -0.02 2.31 16 28 H 0.03 1.69 8.07 -2.38 -0.02 1.67 16 29 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.14 3.75 7.09 -2.39 -0.02 3.73 16 32 H 0.15 3.69 7.79 -2.39 -0.02 3.67 16 33 H 0.18 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -90.28 304.61 4.38 -85.90 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.12 Total: 2.27 kcal Atomic # 6 Polarization: 33.43 SS G_CDS: 5.08 Total: 38.51 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -3.70 Total: -105.44 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -0.15 Total: -69.60 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -90.28 4.38 -85.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085416115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.298 kcal (2) G-P(sol) polarization free energy of solvation -90.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds