Wall clock time and date at job start Mon Mar 30 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00329 * 2 1 4 4 C 1.50705 * 109.47386 * 269.99808 * 3 2 1 5 5 H 1.08003 * 119.99483 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00599 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99719 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00187 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46943 * 59.99901 * 8 6 4 10 10 H 1.48496 * 109.46938 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47032 * 300.00209 * 8 6 4 12 12 C 1.39669 * 119.99951 * 179.97438 * 2 1 3 13 13 C 1.38791 * 120.03618 * 0.02562 * 12 2 1 14 14 C 1.38755 * 119.85452 * 179.97438 * 13 12 2 15 15 N 1.39671 * 120.03652 * 179.97438 * 14 13 12 16 16 N 1.36596 * 119.99907 * 179.97438 * 15 14 13 17 17 C 1.38987 * 119.92494 * 359.97438 * 14 13 12 18 18 C 1.38139 * 120.07467 * 0.02562 * 17 14 13 19 19 N 1.48007 * 119.92541 * 179.97438 * 18 17 14 20 20 O 1.21801 * 119.99882 * 0.02562 * 19 18 17 21 21 O 1.21796 * 120.00016 * 179.97438 * 19 18 17 22 22 C 1.38171 * 120.14622 * 0.02562 * 18 17 14 23 23 H 1.08994 * 109.47397 * 270.00300 * 1 2 3 24 24 H 1.09000 * 109.46665 * 30.00080 * 1 2 3 25 25 H 1.08993 * 109.47107 * 149.99759 * 1 2 3 26 26 H 1.08998 * 109.47480 * 29.99772 * 3 2 1 27 27 H 1.09000 * 109.47495 * 149.99784 * 3 2 1 28 28 H 0.96999 * 119.99714 * 180.02562 * 7 6 4 29 29 H 1.08007 * 120.07060 * 0.25064 * 13 12 2 30 30 H 0.97001 * 119.99909 * 0.02562 * 15 14 13 31 31 H 1.00897 * 111.00480 * 56.04728 * 16 15 14 32 32 H 1.00900 * 111.00115 * 180.02562 * 16 15 14 33 33 H 1.08003 * 119.96565 * 180.02562 * 17 14 13 34 34 H 1.07998 * 119.96417 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5535 3.6180 -0.6732 8 14 3.4382 3.4166 -3.4340 9 1 2.1409 3.5933 -4.1348 10 1 4.1806 4.7027 -3.4340 11 1 4.2415 2.3818 -4.1333 12 6 2.1633 -1.2096 0.0005 13 6 1.4701 -2.4120 0.0005 14 6 2.1677 -3.6114 0.0005 15 7 1.4739 -4.8237 0.0011 16 7 2.1614 -6.0040 0.0006 17 6 3.5575 -3.6052 0.0000 18 6 4.2444 -2.4067 0.0000 19 7 5.7245 -2.4039 0.0000 20 8 6.3355 -3.4576 -0.0005 21 8 6.3315 -1.3480 -0.0005 22 6 3.5529 -1.2105 0.0011 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1383 0.5139 28 1 4.0297 4.4442 -0.8505 29 1 0.3901 -2.4140 -0.0040 30 1 0.5039 -4.8273 0.0011 31 1 2.7986 -6.0517 0.7814 32 1 1.5294 -6.7906 0.0006 33 1 4.1012 -4.5384 -0.0004 34 1 4.0928 -0.2753 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087884099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:53 Heat of formation + Delta-G solvation = 42.174776 kcal Electronic energy + Delta-G solvation = -20051.843076 eV Core-core repulsion = 16795.313456 eV Total energy + Delta-G solvation = -3256.529620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.18838 -40.89049 -38.52904 -37.59126 -36.65430 -34.80392 -32.85807 -31.17735 -30.01077 -28.35043 -27.32324 -26.57279 -24.63232 -23.12245 -21.75033 -20.23452 -19.69869 -18.66314 -18.55730 -18.47455 -17.79706 -17.12804 -16.91131 -16.38569 -16.03493 -15.60644 -15.25626 -14.61600 -14.27497 -13.95466 -13.56541 -13.27684 -13.08119 -12.92289 -12.72450 -12.65320 -12.59222 -12.40044 -12.25825 -12.20537 -11.90253 -11.81289 -10.93864 -10.64547 -10.47085 -8.54619 -8.23572 -8.03771 -6.38556 -1.08552 0.47439 0.50963 0.57831 1.36441 1.40409 1.46858 1.97506 2.31171 2.47574 2.63385 3.06834 3.81696 3.91713 4.03395 4.14622 4.20429 4.39932 4.50994 4.71256 4.86785 4.93242 4.95880 5.05126 5.15297 5.16404 5.25645 5.46396 5.64014 5.78079 6.02087 6.29332 6.55706 6.62852 6.67550 6.76516 7.29612 7.32952 8.82038 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.006358 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.575534 B = 4403.042359 C = 5437.797854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.613 5.613 3 C 0.261 3.739 4 C -0.546 4.546 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.266 3.734 13 C -0.227 4.227 14 C 0.279 3.721 15 N -0.576 5.576 16 N -0.614 5.614 17 C -0.197 4.197 18 C 0.034 3.966 19 N 0.031 4.969 20 O -0.135 6.135 21 O -0.228 6.228 22 C -0.205 4.205 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.022 0.978 27 H 0.009 0.991 28 H 0.267 0.733 29 H 0.169 0.831 30 H 0.422 0.578 31 H 0.343 0.657 32 H 0.376 0.624 33 H 0.158 0.842 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -17.696 3.009 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.318 5.318 3 C 0.139 3.861 4 C -0.585 4.585 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.156 3.844 13 C -0.257 4.257 14 C 0.170 3.830 15 N -0.299 5.299 16 N -0.243 5.243 17 C -0.223 4.223 18 C -0.050 4.050 19 N 0.546 4.454 20 O -0.362 6.362 21 O -0.428 6.428 22 C -0.231 4.231 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.186 0.814 30 H 0.264 0.736 31 H 0.158 0.842 32 H 0.193 0.807 33 H 0.176 0.824 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.057 -17.125 2.372 20.001 hybrid contribution 0.406 0.699 0.150 0.822 sum -9.651 -16.426 2.521 19.217 Atomic orbital electron populations 1.21810 0.77790 1.03513 1.01948 1.47040 1.06375 1.02994 1.75402 1.18906 0.91290 0.80195 0.95703 1.21720 1.36898 1.06591 0.93277 0.92805 1.25733 0.94984 0.96490 1.01234 1.70011 1.38631 1.14775 1.32824 0.85623 0.78684 0.77457 0.80038 1.18736 1.20504 1.20520 1.17283 0.88962 0.87219 0.90950 1.20362 1.01370 0.88012 1.15943 1.16674 0.88974 0.85458 0.91887 1.42975 1.06665 0.98470 1.81835 1.59985 1.19565 0.94599 1.50133 1.19959 0.93453 0.95980 1.12918 1.20455 0.76701 0.96700 1.11121 1.43974 1.04999 0.99797 0.96621 1.94381 1.69905 1.20862 1.51095 1.94597 1.70185 1.21049 1.56956 1.20248 0.94395 0.96761 1.11700 0.91767 0.91930 0.89192 0.96000 0.97275 0.92360 0.81370 0.73639 0.84172 0.80665 0.82434 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.55 10.19 127.77 1.30 3.86 16 2 N -0.61 -23.85 2.99 -726.67 -2.17 -26.02 16 3 C 0.26 13.03 4.91 85.64 0.42 13.45 16 4 C -0.55 -29.91 9.39 25.60 0.24 -29.67 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.02 0.87 5.46 84.65 0.46 1.34 16 7 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.27 9.71 6.55 38.20 0.25 9.96 16 13 C -0.23 -5.91 9.05 22.53 0.20 -5.70 16 14 C 0.28 6.70 6.69 38.20 0.26 6.96 16 15 N -0.58 -8.60 6.66 -51.42 -0.34 -8.94 16 16 N -0.61 -7.45 9.59 37.02 0.36 -7.10 16 17 C -0.20 -5.85 8.86 22.43 0.20 -5.65 16 18 C 0.03 1.31 6.84 36.34 0.25 1.56 16 19 N 0.03 1.28 4.45 -46.56 -0.21 1.08 16 20 O -0.14 -5.15 18.44 18.88 0.35 -4.80 16 21 O -0.23 -10.73 18.44 18.89 0.35 -10.38 16 22 C -0.21 -8.71 8.71 22.43 0.20 -8.52 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 25 H 0.09 1.89 6.19 -2.39 -0.01 1.87 16 26 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 27 H 0.01 0.52 6.19 -2.39 -0.01 0.50 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.17 3.07 6.14 -2.91 -0.02 3.05 16 30 H 0.42 3.78 8.84 -215.50 -1.91 1.88 16 31 H 0.34 3.89 8.43 -210.56 -1.78 2.12 16 32 H 0.38 1.98 9.21 -210.56 -1.94 0.04 16 33 H 0.16 4.20 6.57 -2.91 -0.02 4.18 16 34 H 0.12 5.94 5.68 -2.91 -0.02 5.92 16 Total: -1.00 -70.24 299.03 -0.02 -70.25 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.43 Total: 5.98 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.78 Total: -12.43 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -2.08 Total: -95.08 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.70 Total: -15.18 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.24 -0.02 -70.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.428 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds